Last modified by jensb on 2023/04/27 14:17
From version 6.1
edited by jensb
on 2023/03/10 14:18
Change comment: There is no comment for this version
To version 26.1
edited by jensb
on 2023/04/14 18:13
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -2,9 +2,9 @@
2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= My Collab's Extended Title =
5 += SC3 Visualization Framework Use Case =
6 6  
7 -My collab's subtitle
7 +Use ViSimpl together with NEST Desktop and Insite
8 8  )))
9 9  )))
10 10  
... ... @@ -12,18 +12,82 @@
12 12  (((
13 13  (% class="col-xs-12 col-sm-8" %)
14 14  (((
15 -= What can I find here? =
15 += Overview =
16 16  
17 -* Notice how the table of contents on the right
18 -* is automatically updated
19 -* to hold this page's headers
17 +* This page serves as a central information hub presenting an overview of the work done in the SC3 Visualization Framework Use Case.
18 +* In this use case, a connection between NEST Desktop, ViSimpl and Insite was realized.
19 +* The detailed setup guides can be found in the official user guides of NEST Desktop and ViSimpl on ReadTheDocs:
20 +** ViSimpl [[https:~~/~~/visimpl-documentation.readthedocs.io/en/latest/06-NestInsite.html>>url:https://visimpl-documentation.readthedocs.io/en/latest/06-NestInsite.html]]
21 +** NEST Desktop [[https:~~/~~/nest-desktop.readthedocs.io/en/latest/user/usage-external/usage-with-visimpl.html>>https://nest-desktop.readthedocs.io/en/latest/user/usage-external/usage-with-visimpl.html]]
22 +* More documentation regarding the used in-situ recording backend Insite can be found in the Insite user docs: [[https:~~/~~/vrgrouprwth.github.io/insite/>>https://vrgrouprwth.github.io/insite/]]
20 20  
21 -= Who has access? =
24 +(% style="text-align:center" %)
25 +[[image:image-20230414174434-2.png||alt="NEST Desktop Setting up a network with ViSimpl waiting for the results"]]
22 22  
23 -Describe the audience of this collab.
27 +(% style="text-align:center" %)
28 +[[image:image-20230414174907-3.png||alt="NEST Desktop receiving simulation results via Insite while ViSimpl waits"]]
29 +
30 +(% style="text-align:center" %)
31 +[[image:image-20230414175125-4.png||alt="ViSimpl visualizing the simulation results next to NEST Desktop"]]
32 +
33 +(% class="wikigeneratedid" %)
34 += =
35 +
36 += Preparation (Quickstart Guide) =
37 +
38 +First, download the Docker Compose configuration file for NEST Desktop and Insite.
39 +
40 +(% class="box" %)
41 +(((
42 +##wget https:~/~/raw.githubusercontent.com/nest-desktop/nest-desktop-docker/main/examples/insite/docker-compose.yml##
24 24  )))
25 25  
45 +Then, pull the docker images using Docker Compose.
26 26  
47 +(% class="box" %)
48 +(((
49 +##docker-compose pull##
50 +)))
51 +
52 +Afterwards, you can start NEST Desktop (with Insite).
53 +
54 +(% class="box" %)
55 +(((
56 +##docker-compose up##
57 +)))
58 +
59 +----
60 +
61 +For ViSimpl, download the (binary) AppImage from the [[page>>url:https://vg-lab.es/visimpl/#downloads]], make it executable and then open it.
62 +
63 +(% class="box" %)
64 +(((
65 +##VERSION=1.8.3
66 +wget https:~/~/vg-lab.es/apps/visimpl/latest-release/visimpl-$VERSION-x86_64.AppImage
67 +chmod +x visimpl-$VERSION-x86_64.AppImage
68 +./visimpl-$VERSION-x86_64.AppImage##
69 +)))
70 +
71 +(% class="wikigeneratedid" %)
72 += =
73 +
74 += How to use NEST Desktop with ViSimpl (Quickstart Guide) =
75 +
76 +1. In NEST Desktop, make sure that both backends (NEST Simulator and Insite) are running.
77 +1. Run the simulation of the network with Insite as recording backend.
78 +1. In ViSimpl, click on the REST button to get data from Insite (check that you use the correct URL).
79 +1. Now, ViSimpl shows spatial dots representing neurons and spikes are displayed in glowing mode.
80 +
81 +(% class="wikigeneratedid" %)
82 += =
83 +
84 += Usage Video =
85 +
86 +* A video showing the usage can be found [[here>>doc:Video]].
87 +)))
88 +
89 +
90 +
27 27  (% class="col-xs-12 col-sm-4" %)
28 28  (((
29 29  {{box title="**Contents**"}}
image-20230414174419-1.png
Author
... ... @@ -1,0 +1,1 @@
1 +XWiki.jensb
Size
... ... @@ -1,0 +1,1 @@
1 +931.5 KB
Content
image-20230414174434-2.png
Author
... ... @@ -1,0 +1,1 @@
1 +XWiki.jensb
Size
... ... @@ -1,0 +1,1 @@
1 +931.5 KB
Content
image-20230414174907-3.png
Author
... ... @@ -1,0 +1,1 @@
1 +XWiki.jensb
Size
... ... @@ -1,0 +1,1 @@
1 +1.3 MB
Content
image-20230414175125-4.png
Author
... ... @@ -1,0 +1,1 @@
1 +XWiki.jensb
Size
... ... @@ -1,0 +1,1 @@
1 +2.2 MB
Content
Collaboratory.Apps.Collab.Code.CollabClass[0]
Public
... ... @@ -1,1 +1,1 @@
1 -No
1 +Yes