Last modified by jfioril1 on 2022/05/23 22:36
From version 31.1
edited by denker
on 2020/04/03 17:19
Change comment: There is no comment for this version
To version 23.1
edited by denker
on 2020/04/03 16:33
Change comment: There is no comment for this version

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5 -= Multi-area Multi-sensory Representations in Freely Moving Rats =
5 += Multi-area multi-sensory representations in freely moving rats =
6 6  
7 -**Use Case SGA2-SP3-003: Analysis pipeline for representation and analysis of electrophysiological data**
8 -
9 -To be discussed Author order, contributions,...:
10 -
11 -Experiments: Julien Fiorelli^^2^^, ?Pietro Marchesi^^2^^
12 -
13 -Implementation: Regimantas Jurkus^^1^^, Julien Fiorelli^^2^^, Pietro Marchesi^^2^^, Thijs Ruikes^^2^^
14 -
15 -Lead: Michael Denker^^1^^, Cyril Pennartz^^2^^
16 -
17 -,,1) Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany,,
18 -
19 -,,2) Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, Netherlands,,
7 +Analysis pipeline for representation and analysis of electrophysiological data
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22 22  
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27 -== Demonstration of the analysis of electrophysiological data ==
15 += What can I find here? =
28 28  
29 29  A notebook that demonstrates how to apply the pipeline to a complex dataset.
30 30  \\The aim of this note-book is twofold. Firstly,we aim to demonstrate the advantage of a common and shared data representation format for a challenging and complex electrophysiology dataset. The second aim is to showcase the first part of a pipeline for analysing for population-level data, including parallel spiking activity, paired with and behavioural and cognitive state variables.
31 31  
32 -This Collab is aimed at experimental and computational neuroscientists interested in the usage of the Neo and Elephant tools in performing data analysis of spiking data.
33 -
34 -== Executing the analysis notebook ==
35 -
36 -* **Copy the collab drive to your drive space**
37 -** Open the Drive from the left menu
38 -** Select "Demonstrator_Use_Case_SGA2-SP3-003.ipynb", the "Figures" folder, and the "Data" folder
39 -** Copy the selected items, and select the destination 'My Library' from the dropdown 'Other Libraries'
40 -
41 -* **Start a Jupyter Hub instance **
42 -In another browser, open [[https:~~/~~/lab.ebrains.eu>>url:https://lab.ebrains.eu]]
43 -
44 -* **Run the notebook**
45 -In the Jupyter Hub, navigate to `drive/My Libraries/My Library/Demonstrator_Use_Case_SGA2-SP3-003.ipynb`, and run the notebook.
46 -
47 -
48 48  == License (to discuss) ==
49 49  
50 50  All text and example data in this collab is licensed under Creative Commons CC-BY 4.0 license. Software code is licensed under a modified BSD license.