Last modified by jfioril1 on 2022/05/23 22:36
From version 33.1
edited by jurkusr
on 2020/04/03 17:35
Change comment: There is no comment for this version
To version 27.1
edited by denker
on 2020/04/03 16:56
Change comment: There is no comment for this version

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1 -XWiki.jurkusr
1 +XWiki.denker
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4 4  (((
5 5  = Multi-area Multi-sensory Representations in Freely Moving Rats =
6 6  
7 -**Use Case SGA2-SP3-003: Analysis pipeline for representation and analysis of electrophysiological data**
8 -
9 -To be discussed Author order, contributions,...:
10 -
11 -Experiments: Julien Fiorilli^^2^^
12 -
13 -Implementation: Regimantas Jurkus^^1^^, Julien Fiorilli^^2^^, Pietro Marchesi^^2^^, Thijs Ruikes^^2^^
14 -
15 -Lead: Michael Denker^^1^^, Sonja Grün^^1^^, Cyril Pennartz^^2^^
16 -
17 -,,1) Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany,,
18 -
19 -,,2) Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, Netherlands,,
7 +Use Case SGA2-SP3-003: Analysis pipeline for representation and analysis of electrophysiological data
20 20  )))
21 21  )))
22 22  
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31 31  
32 32  This Collab is aimed at experimental and computational neuroscientists interested in the usage of the Neo and Elephant tools in performing data analysis of spiking data.
33 33  
34 -== Executing the analysis notebook ==
22 +== Executing the pipeline ==
35 35  
24 +[[image:pipeline_flowchart.png]]
25 +
26 +=== In the HBP Collab (beta) ===
27 +
36 36  * **Copy the collab drive to your drive space**
37 37  ** Open the Drive from the left menu
38 -** Select "Demonstrator_Use_Case_SGA2-SP3-003.ipynb", the "Figures" folder, and the "Data" folder
39 -** Copy the selected items, and select the destination 'My Library' from the dropdown 'Other Libraries'
30 +** Select the folders 'pipeline' and 'datasets'
31 +** Select 'Copy', and then 'My Library' from the dropdown 'Other Libraries'
40 40  
41 41  * **Start a Jupyter Hub instance **
42 42  In another browser, open [[https:~~/~~/lab.ebrains.eu>>url:https://lab.ebrains.eu]]
43 43  
44 44  * **Run the notebook**
45 -In the Jupyter Hub, navigate to `drive/My Libraries/My Library/Demonstrator_Use_Case_SGA2-SP3-003.ipynb`, and run the notebook.
46 -
37 +In the Jupyter Hub, navigate to `drive/My Libraries/My Library/XXX.ipynb`, and run the notebook.
47 47  
48 48  == License (to discuss) ==
49 49