Last modified by jfioril1 on 2022/05/23 22:36
From version 75.1
edited by denker
on 2020/05/08 15:19
Change comment: There is no comment for this version
To version 84.1
edited by jfioril1
on 2020/05/08 17:37
Change comment: There is no comment for this version

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1 -XWiki.denker
1 +XWiki.jfioril1
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4 4  (((
5 5  = Temporal Structure in Recorded Ensemble Activity =
6 6  
7 -**Contribution to Use Case SGA2-SP3-003: Pipeline for analyzing Temporal structure in recorded Ensemble Activity and related Systems Neuroscience data in association with behavior, cognitive processing and modeling**
7 +**Contribution to Use Case SGA2-SP3-003: Pipeline for analyzing the temporal structure in recorded Ensemble Activity and related Systems Neuroscience data in association with behavior, cognitive processing and modeling**
8 8  
9 9  Experiments: Julien Fiorilli^^2^^
10 10  
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26 26  (((
27 27  == Synopsis of this demonstration ==
28 28  
29 -This notebook, aimed at experimental and computational neuroscientists, demonstrates the principles of performing analysis of activity data on a complex dataset using the Neo and Elephant tools. We demonstrate the advantage of a common and shared data representation format for a challenging and complex electrophysiology dataset. Also, we showcase the first part of a pipeline for analysing for population-level data, including parallel spiking activity, paired with and behavioural and cognitive state variables.
29 +This notebook, aimed at experimental and computational neuroscientists, demonstrates the principles of performing analysis of activity data on a complex dataset using the Neo and Elephant tools. We demonstrate the advantage of a common and shared data representation format for a challenging and complex electrophysiology dataset. Also, we showcase the first part of a pipeline for analysing for population-level data, including parallel spiking activity, paired with behavioural and cognitive state variables.
30 30  
31 31  A detailed description is found in the interactive Jupyter notebook.
32 32  
33 33  == Executing the analysis notebook ==
34 34  
35 +Users outside the HBP community can download the notebook to their local computer by opening: [[https:~~/~~/drive.ebrains.eu/d/26ee91ed433049278d0e/>>url:https://drive.ebrains.eu/d/26ee91ed433049278d0e/]]
36 +\\If you do have an ebrains account:
37 +
35 35  * **Copy the collab drive to your drive space**
36 36  ** Open the Drive from the left menu
37 37  ** Select "Demonstrator_Use_Case_SGA2-SP3-003.ipynb", the "Figures" folder, and the "Data" folder
38 38  ** Copy the selected items, and select the destination 'My Library' from the dropdown 'Other Libraries'
39 -
42 +\\
40 40  * **Start a Jupyter Hub instance **
41 41  In another browser, open [[https:~~/~~/lab.ebrains.eu>>url:https://lab.ebrains.eu]]
42 42  
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