Last modified by jfioril1 on 2022/05/23 22:36
From version 76.1
edited by denker
on 2020/05/08 15:23
Change comment: There is no comment for this version
To version 49.1
edited by jfioril1
on 2020/04/15 14:25
Change comment: There is no comment for this version

Summary

Details

Page properties
Author
... ... @@ -1,1 +1,1 @@
1 -XWiki.denker
1 +XWiki.jfioril1
Content
... ... @@ -4,19 +4,19 @@
4 4  (((
5 5  = Temporal Structure in Recorded Ensemble Activity =
6 6  
7 -**Contribution to Use Case SGA2-SP3-003: Pipeline for analyzing the temporal structure in recorded Ensemble Activity and related Systems Neuroscience data in association with behavior, cognitive processing and modeling**
7 +**Use Case SGA2-SP3-003: Pipeline for analyzing Temporal structure in recorded Ensemble Activity and related Systems Neuroscience data in association with behavior, cognitive processing and modeling**
8 8  
9 +To be discussed Author order, contributions,...:
10 +
9 9  Experiments: Julien Fiorilli^^2^^
10 10  
11 11  Implementation: Regimantas Jurkus^^1^^, Julien Fiorilli^^2^^, Pietro Marchesi^^2^^, Thijs Ruikes^^2^^
12 12  
13 -Lead: Michael Denker^^1^^, Sonja Grün^^1,3^^, Cyriel Pennartz^^2^^
15 +Lead: Michael Denker^^1^^, Sonja Grün^^1^^, Cyriel Pennartz^^2^^
14 14  
15 15  ,,1) Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany,,
16 16  
17 17  ,,2) Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, Netherlands,,
18 -
19 -,,3) Theoretical Systems Neurobiology, RWTH Aachen University, Aachen, Germany,,
20 20  )))
21 21  )))
22 22  
... ... @@ -24,11 +24,12 @@
24 24  (((
25 25  (% class="col-xs-12 col-sm-8" %)
26 26  (((
27 -== Synopsis of this demonstration ==
27 +== Demonstration of the analysis of electrophysiological data ==
28 28  
29 -This notebook, aimed at experimental and computational neuroscientists, demonstrates the principles of performing analysis of activity data on a complex dataset using the Neo and Elephant tools. We demonstrate the advantage of a common and shared data representation format for a challenging and complex electrophysiology dataset. Also, we showcase the first part of a pipeline for analysing for population-level data, including parallel spiking activity, paired with and behavioural and cognitive state variables.
29 +A notebook that demonstrates how to apply the pipeline to a complex dataset.
30 +\\The aim of this note-book is twofold. Firstly, we aim to demonstrate the advantage of a common and shared data representation format for a challenging and complex electrophysiology dataset. The second aim is to showcase the first part of a pipeline for analysing for population-level data, including parallel spiking activity, paired with and behavioural and cognitive state variables.
30 30  
31 -A detailed description is found in the interactive Jupyter notebook.
32 +This Collab is aimed at experimental and computational neuroscientists interested in the usage of the Neo and Elephant tools in performing data analysis of spiking data.
32 32  
33 33  == Executing the analysis notebook ==
34 34  
... ... @@ -46,11 +46,11 @@
46 46  
47 47  == License ==
48 48  
49 -All text and example data in this collab is licensed under under a [[Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License>>url:https://creativecommons.org/licenses/by-nc-nd/4.0/]]. Software code is licensed under [[a modified BSD license>>https://opensource.org/licenses/BSD-3-Clause]].
50 -Please note that the data in this Collab is preliminary and might therefore still contain inaccuracies in specific event timestamps.
50 +All text and example data in this collab is licensed under Creative Commons CC-BY 4.0 license. Software code is licensed under a modified BSD license. Please note that the data in this Collab is preliminary and might therefore still contain inaccuracies in event specific timestamps.
51 51  
52 -[[image:88x31.png]]
52 +[[image:https://i.creativecommons.org/l/by/4.0/88x31.png||style="float:left"]]
53 53  
54 +== ==
54 54  
55 55  == Acknowledgments ==
56 56  
88x31.png
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.jurkusr
Size
... ... @@ -1,1 +1,0 @@
1 -1.7 KB
Content
Collaboratory.Apps.Collab.Code.CollabClass[0]
Description
... ... @@ -1,1 +1,1 @@
1 -Contribution to Use Case SGA2-SP3-003: Pipeline for analyzing Temporal structure in recorded Ensemble Activity and related Systems Neuroscience data in association with behavior, cognitive processing and modeling
1 +This collaboration space is created to showcase examples of the progress made for the SP3 Use Case 3, highlight the tools used and outline the next steps to be taken.