Attention: The Collaboratory IAM will down for up to 1 hour on Monday, the 7th of July 2025 starting from 5pm CEST (my timezone) for up to 1 hour. Any and all services, which require a user login with an EBRAINS account, will be un-available during that time


Changes for page SGA3 D1.1 Showcase 1

Last modified by dicksche on 2022/05/23 22:24
From version 11.1
edited by dicksche
on 2020/12/17 07:36
Change comment: There is no comment for this version
To version 12.1
edited by dicksche
on 2020/12/17 07:43
Change comment: There is no comment for this version

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16 -//This collab hosts a jupyter notebook which demonstrates a first prototype coupling of the [[EBRAINS human brain atlas>>https://ebrains.eu/services/atlases]] with the [[The VirtualBrain simulator>>https://ebrains.eu/service/the-virtual-brain]] in a purely programmatic fashion. The notebook is accessible from the [[JupyterLab>>https://lab.ebrains.eu/user/dicksche/lab/tree/drive/Shared%20with%20groups/SGA3%20D1.1%20Showcase%201/D1.1%20Showcase%201%20TVB%20Atlas%20Integration%20Prototype.ipynb]] of this collaboratory.//
16 +//This collab hosts a jupyter notebook which demonstrates a first prototype coupling of the [[EBRAINS human brain atlas>>https://ebrains.eu/services/atlases]] with the [[The VirtualBrain simulator>>https://ebrains.eu/service/the-virtual-brain]] in a purely programmatic fashion. The notebook is accessible from  as a Jupyter notebook from this collaboratory.//
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20 +//[[Open Jupyter Notebook with the Demo>>https://lab.ebrains.eu/user/dicksche/lab/tree/drive/Shared%20with%20groups/SGA3%20D1.1%20Showcase%201/D1.1%20Showcase%201%20TVB%20Atlas%20Integration%20Prototype.ipynb]]//
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18 18  == Prototype coupling of TVB and EBRAINS atlas services ==
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20 20  The demo showcases how data services and computing can interact in a well-structured and meaningful way in the collaboratory. It is the first use case for purely programmatic access to EBRAINS atlases using a new Python client, //brainscapes//. While not all datasets and functionalities are yet accessible through the client, it makes data formats, region specifications and access patterns explicit, thereby fertilizing co-design and boosting the collaboration between WP1 and WP4.