Changes for page SGA3 D1.2 Showcase 1
Last modified by fousekjan on 2022/07/04 18:31
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... ... @@ -30,36 +30,9 @@ 30 30 1. Dynamics of the model, and execution of a parameter study 31 31 1. Summary of the simulation results for the whole cohort 32 32 33 -Link to the notebook: 34 - 35 -* [[virtual_ageing/notebooks/1_BNM_for_resting_state.ipynb>>https://lab.ch.ebrains.eu/user-redirect/lab/tree/shared/SGA3%20D1.2%20Showcase%201/virtual_ageing/notebooks/1_BNM_for_resting_state.ipynb]] 36 - 37 37 [[image:image-20220103100841-2.png]] 38 38 39 -== Virtual ageing trajectories == 40 40 41 -The second steps shows the investigation of virtual ageing trajectory for each subject. In this context, we are going to show 42 - 43 -1. What we mean by virtual ageing and what is the empirical basis to investigate this approach 44 -1. How we can virtually age a subject using whole-brain modelling 45 -1. How the increase structure-function relationship relates to virtual ageing 46 - 47 -Link to the notebook: 48 - 49 -* [[virtual_ageing/notebooks/2_virtual_ageing_trajectories.ipynb>>https://lab.ch.ebrains.eu/user-redirect/lab/tree/shared/SGA3%20D1.2%20Showcase%201/virtual_ageing/notebooks/2_virtual_ageing_trajectories.ipynb]] 50 - 51 -[[image:image-20220103101022-3.png]] 52 - 53 -(% class="wikigeneratedid" %) 54 -== Inference with SBI == 55 - 56 -Last step of the inter-individual variability workflow 57 - 58 - 59 -Link to the notebook: 60 - 61 -* [[virtual_ageing/notebooks/3_inference_with_SBI.ipynb>>https://lab.ch.ebrains.eu/user-redirect/lab/tree/shared/SGA3%20D1.2%20Showcase%201/virtual_ageing/notebooks/3_inference_with_SBI.ipynb]] 62 - 63 63 == Regional variability data == 64 64 65 65 The first step of the regional variability workflow loads the data from the Knowledge Graph and defines the regional bias on the model. In this case we require: 1) structural connectivity matrices, 2) GABA and AMPA receptor densities at each region, and 3) empirical resting-state fMRI data for fitting and validation of the simulations. The three datasets shall be characterised in the same parcellation.