Changes for page SGA3 D1.5 Showcase 1
Last modified by gorkazl on 2023/11/13 14:27
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... ... @@ -31,7 +31,7 @@ 31 31 (% class="wikigeneratedid" %) 32 32 The Showcase 1 aimed at investigations related to variability in neuroscience from two perspectives: (a) the interpersonal variability studied by the virtual ageing study, and (b) the variability across different cortical regions within an individual brain. 33 33 34 -== a. Interpersonal variability –virtual ageing ==34 +== a. Interpersonal variability—virtual ageing == 35 35 36 36 (% class="wikigeneratedid" %) 37 37 See the details of the first study in the following publication: ... ... @@ -77,7 +77,7 @@ 77 77 78 78 * [[virtual_ageing/notebooks/3_inference_with_SBI.ipynb>>https://lab.ch.ebrains.eu/user-redirect/lab/tree/shared/SGA3%20D1.2%20Showcase%201/virtual_ageing/notebooks/3_inference_with_SBI.ipynb]] 79 79 80 -== b. Regional variability – Receptor density maps==80 +== b. Regional variability == 81 81 82 82 Aims at demonstrating the construction of whole-brain network models of the brain's activity, accounting for differences in receptor densities across cortical regions. 83 83 ... ... @@ -89,7 +89,7 @@ 89 89 1. GABAa and AMPA receptor densities for each brain region, and 90 90 1. empirical resting-state fMRI data for fitting and validation of the simulations. 91 91 92 -The three datasets a re characterised in the same parcellation. Link to the notebook:92 +The three datasets shall be characterised in the same parcellation. Link to the notebook: 93 93 94 94 * [[regional_variability/notebooks/1_load_data.ipynb>>https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/SGA3%20D1.2%20Showcase%201/regional_variability/notebooks/1_load_data.ipynb]] 95 95 ... ... @@ -96,9 +96,9 @@ 96 96 (% style="text-align:center" %) 97 97 [[image:download - 2022-02-10T130815.902.png||alt="region-wise gene expression heterogeneity"]] 98 98 99 -=== Fitting model parameters with regional bias === 99 +=== Fitting model parameters for models with regional bias === 100 100 101 -A series of simulations of the whole-brain network model are launched in the EBRAINS HPC facilities in order to identify the optimal model parameters leading to simulated resting-state brain activity that best resembles the empirically observed activity. In this branch of the showcase, brain regions are simulated using the mean-field AdEx population model; specifically modified to account for the regional densities of GABAa and AMPA neuroreceptors. See the details in thefollowing document.101 +A series of simulations of the whole-brain network model are launched in the EBRAINS HPC facilities in order to identify the optimal model parameters leading to simulated resting-state brain activity that best resembles the empirically observed activity. In this branch of the showcase, brain regions are simulated using the mean-field AdEx population model; specifically modified to account for the regional densities of GABAa and AMPA neuroreceptors. See the details following document. 102 102 103 103 Link to the notebook: 104 104