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Author

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1		-XWiki.gorkazl
	1	+XWiki.fousekjan

Content

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51	51
52	52	* [[virtual_ageing/notebooks/1_BNM_for_resting_state.ipynb>>https://lab.ch.ebrains.eu/user-redirect/lab/tree/shared/SGA3%20D1.2%20Showcase%201/virtual_ageing/notebooks/1_BNM_for_resting_state.ipynb]]
53	53
54		-[[image:image-20220103100841-2.png]]
55	55
	55	+[[image:https://wiki.ebrains.eu/bin/download/Collabs/sga3-d1-2-showcase-1/WebHome/image-20220103100841-2.png?rev=1.1||alt="image-20220103100841-2.png"]]
	56	+
56	56	=== Virtual ageing trajectories ===
57	57
58	58	The second steps shows the investigation of virtual ageing trajectory for each subject. In this context, we are going to show:
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65	65
66	66	* [[virtual_ageing/notebooks/2_virtual_ageing_trajectories.ipynb>>https://lab.ch.ebrains.eu/user-redirect/lab/tree/shared/SGA3%20D1.2%20Showcase%201/virtual_ageing/notebooks/2_virtual_ageing_trajectories.ipynb]]
67	67
68		-[[image:image-20220103101022-3.png]]
	69	+[[image:https://wiki.ebrains.eu/bin/download/Collabs/sga3-d1-2-showcase-1/WebHome/image-20220103101022-3.png?rev=1.1||alt="image-20220103101022-3.png"]]
69	69
70	70	=== Inference with SBI ===
71	71
72	72	The last step of the inter-individual variability workflow employs Simulation Based Inference for estimation of the full posterior values of the parameters. Here, a deep neural estimator is trained to provide a relationship between the parameters of a model (black box simulator) and selected descriptive statistics of the observed data.
73	73
74		-[[image:image-20220103104332-4.png||height="418" width="418"]]
	75	+[[image:https://wiki.ebrains.eu/bin/download/Collabs/sga3-d1-2-showcase-1/WebHome/image-20220103104332-4.png?width=418&height=418&rev=1.1||alt="image-20220103104332-4.png"]]
75	75
76	76	Link to the notebook:
77	77
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94	94	* [[regional_variability/notebooks/1_load_data.ipynb>>https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/SGA3%20D1.2%20Showcase%201/regional_variability/notebooks/1_load_data.ipynb]]
95	95
96		-(% style="text-align:center" %)
97		-[[image:download - 2022-02-10T130815.902.png||alt="region-wise gene expression heterogeneity"]]
	97	+[[image:https://wiki.ebrains.eu/bin/download/Collabs/sga3-d1-2-showcase-1/WebHome/download%20-%202022-02-10T130815.902.png?rev=1.1||alt="region-wise gene expression heterogeneity"]]
98	98
99	99	=== Fitting model parameters with regional bias ===
100	100
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105	105	* [[regional_variability/notebooks/2_parameter_swep.ipynb>>https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/SGA3%20D1.2%20Showcase%201/regional_variability/notebooks/2_parameter_swep.ipynb]]
106	106
107		-[[image:download - 2022-02-10T131102.033.png||alt="regional bias vs goodness of fit"]]
	107	+[[image:https://wiki.ebrains.eu/bin/download/Collabs/sga3-d1-2-showcase-1/WebHome/download%20-%202022-02-10T131102.033.png?rev=1.1||alt="regional bias vs goodness of fit"]]
108	108	)))
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