Changes for page SGA3 D1.5 Showcase 1

Last modified by gorkazl on 2023/11/13 14:27
From version 21.1
edited by gorkazl
on 2023/10/31 21:20
Change comment: There is no comment for this version
To version 22.1
edited by gorkazl
on 2023/11/13 14:25
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -100,11 +100,12 @@
100 100  
101 101  === Fitting model parameters with regional bias ===
102 102  
103 -A series of simulations of the whole-brain network model are launched in the EBRAINS HPC facilities in order to identify the optimal model parameters leading to simulated resting-state brain activity that best resembles the empirically observed activity. In this branch of the showcase, brain regions are simulated using the mean-field AdEx population model; specifically modified to account for the regional densities of GABAa and AMPA neuroreceptors. See the details in the following document.
103 +A series of simulations of the whole-brain network model are launched in the EBRAINS HPC facilities in order to identify the optimal model parameters leading to simulated resting-state brain activity that best resembles the empirically observed activity. In this branch of the showcase, brain regions are simulated using the mean-field AdEx population model; specifically modified to account for the regional densities of GABAa and AMPA neuroreceptors. We provide two versions of the calculations, developed during the course of SGA3 of the HBP, in order to accelerate vast parametric sweeps over standard TVB simulation. The first employs the "RateML" to run TVB simulation on GPUs and the second is based on a novel TVB backend running on C++.
104 104  
105 -Link to the notebook:
105 +Link to the notebooks:
106 106  
107 -* [[regional_variability/notebooks/2_parameter_swep.ipynb>>https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/SGA3%20D1.5%20Showcase%201/regional_variability/notebooks/2_parameter_swep.ipynb]]
107 +* [[regional_variability/notebooks/3a_vast_paramsweep_GPU.ipynb>>https://drive.ebrains.eu/smart-link/73ef88f7-0ce4-4b01-a083-f65a40514f5d/]]
108 +* [[regional_variability/notebooks/3b_vast_paramsweep_TVBCpp.ipynb>>https://drive.ebrains.eu/smart-link/31f9e2dd-6576-4fa8-805d-76f47906c04e/]]
108 108  
109 109  [[image:https://wiki.ebrains.eu/bin/download/Collabs/sga3-d1-2-showcase-1/WebHome/download%20-%202022-02-10T131102.033.png?rev=1.1||alt="regional bias vs goodness of fit"]]
110 110  )))