Changes for page SGA3 D1.5 Showcase 1
Last modified by gorkazl on 2023/11/13 14:27
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... ... @@ -29,11 +29,17 @@ 29 29 ))) 30 30 31 31 (% class="wikigeneratedid" %) 32 -The virtualageingudy isdescribed in detail infollowingpublication:32 +The Showcase 1 aimed at investigations related to variability in neuroscience from two perspectives: (a) the interpersonal variability studied by the virtual ageing study, and (b) the variability across different cortical regions within an individual brain. 33 33 34 +(% class="wikigeneratedid" %) 35 +== (a) Interpersonal variability—virtual ageing == 36 + 37 +(% class="wikigeneratedid" %) 38 +See the details of the first study in the following publication: 39 + 34 34 M. Lavanga, J. Stumme, B. H. Yalcinkaya, J. Fousek, C. Jockwitz, H. Sheheitli, N. Bittner, M. Hashemi, S. Petkoski, S. Caspers, and V. Jirsa, [[The Virtual Aging Brain: A Model-Driven Explanation for Cognitive Decline in Older Subjects>>https://doi.org/10.1101/2022.02.17.480902]]. 35 35 36 -== Simulation of resting-state activity == 42 +=== Simulation of resting-state activity === 37 37 38 38 The fist notebook in the inter-individual variability workflow explores the resting-state simulation for a subject of the 1000BRAINS dataset. Functional data are simulated by means of a brain network model implemented in TVB, which is an ensemble of neural mass models linked via the weights of the structural connectivity (SC) matrix. Following topics are covered: 39 39 ... ... @@ -48,7 +48,7 @@ 48 48 49 49 [[image:image-20220103100841-2.png]] 50 50 51 -== Virtual ageing trajectories == 57 +=== Virtual ageing trajectories === 52 52 53 53 The second steps shows the investigation of virtual ageing trajectory for each subject. In this context, we are going to show: 54 54 ... ... @@ -62,7 +62,7 @@ 62 62 63 63 [[image:image-20220103101022-3.png]] 64 64 65 -== Inference with SBI == 71 +=== Inference with SBI === 66 66 67 67 The last step of the inter-individual variability workflow employs Simulation Based Inference for estimation of the full posterior values of the parameters. Here, a deep neural estimator is trained to provide a relationship between the parameters of a model (black box simulator) and selected descriptive statistics of the observed data. 68 68 ... ... @@ -72,8 +72,13 @@ 72 72 73 73 * [[virtual_ageing/notebooks/3_inference_with_SBI.ipynb>>https://lab.ch.ebrains.eu/user-redirect/lab/tree/shared/SGA3%20D1.2%20Showcase%201/virtual_ageing/notebooks/3_inference_with_SBI.ipynb]] 74 74 75 -== Regional variability data == 81 +(% class="wikigeneratedid" %) 82 +== (b) Regional variability == 76 76 84 +This part of the Showcase aims at demonstrating whole-brain network models of the brain's activity 85 + 86 +=== Loading the data from EBRAINS via the //siibra// interface === 87 + 77 77 The first step of the regional variability workflow consists in loading the data from the Knowledge Graph, including the regional bias on the model. In this case we require: 78 78 79 79 1. Structural connectivity matrices,