Changes for page SGA3 D1.5 Showcase 1

Last modified by gorkazl on 2023/11/13 14:27

From version 9.10
edited by gorkazl
on 2023/10/08 18:43
Change comment: There is no comment for this version
To version 9.11
edited by gorkazl
on 2023/10/08 18:56
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -29,11 +29,17 @@
29 29  )))
30 30  
31 31  (% class="wikigeneratedid" %)
32 -The virtual ageing study is described in detail in following publication:
32 +The Showcase 1 aimed at investigations related to variability in neuroscience from two perspectives: (a) the interpersonal variability studied by the virtual ageing study, and (b) the variability across different cortical regions within an individual brain.
33 33  
34 +(% class="wikigeneratedid" %)
35 +== (a) Interpersonal variability—virtual ageing ==
36 +
37 +(% class="wikigeneratedid" %)
38 +See the details of the first study in the following publication:
39 +
34 34  M. Lavanga, J. Stumme, B. H. Yalcinkaya, J. Fousek, C. Jockwitz, H. Sheheitli, N. Bittner, M. Hashemi, S. Petkoski, S. Caspers, and V. Jirsa, [[The Virtual Aging Brain: A Model-Driven Explanation for Cognitive Decline in Older Subjects>>https://doi.org/10.1101/2022.02.17.480902]].
35 35  
36 -== Simulation of resting-state activity ==
42 +=== Simulation of resting-state activity ===
37 37  
38 38  The fist notebook in the inter-individual variability workflow explores the resting-state simulation for a subject of the 1000BRAINS dataset. Functional data are simulated by means of a brain network model implemented in TVB, which is an ensemble of neural mass models linked via the weights of the structural connectivity (SC) matrix. Following topics are covered:
39 39  
... ... @@ -48,7 +48,7 @@
48 48  
49 49  [[image:image-20220103100841-2.png]]
50 50  
51 -== Virtual ageing trajectories ==
57 +=== Virtual ageing trajectories ===
52 52  
53 53  The second steps shows the investigation of virtual ageing trajectory for each subject. In this context, we are going to show:
54 54  
... ... @@ -62,7 +62,7 @@
62 62  
63 63  [[image:image-20220103101022-3.png]]
64 64  
65 -== Inference with SBI ==
71 +=== Inference with SBI ===
66 66  
67 67  The last step of the inter-individual variability workflow employs Simulation Based Inference for estimation of the full posterior values of the parameters. Here, a deep neural estimator is trained to provide a relationship between the parameters of a model (black box simulator) and selected descriptive statistics of the observed data.
68 68  
... ... @@ -72,8 +72,13 @@
72 72  
73 73  * [[virtual_ageing/notebooks/3_inference_with_SBI.ipynb>>https://lab.ch.ebrains.eu/user-redirect/lab/tree/shared/SGA3%20D1.2%20Showcase%201/virtual_ageing/notebooks/3_inference_with_SBI.ipynb]]
74 74  
75 -== Regional variability data ==
81 +(% class="wikigeneratedid" %)
82 +== (b) Regional variability ==
76 76  
84 +This part of the Showcase aims at demonstrating whole-brain network models of the brain's activity
85 +
86 +=== Loading the data from EBRAINS via the //siibra// interface ===
87 +
77 77  The first step of the regional variability workflow consists in loading the data from the Knowledge Graph, including the regional bias on the model. In this case we require:
78 78  
79 79  1. Structural connectivity matrices,