Wiki source code of SGA3 D1.5 Showcase 1

Version 5.1 by fousekjan on 2023/09/21 15:06
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5 = Final demonstrator software =
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7 SGA3 D1.5 - Showcase 1: "Degeneracy in neuroscience - when is Big Data big enough"
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15 The Showcase is implemented as a series of interactive Jupyter notebooks covering the individual logical steps and can be accessed in a dedicated public EBRAINS collab.
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17 The EBRAINS collab is a virtual environment that interlinks the Drive, Bucket, Wiki, and Lab services. The Drive provides storage for small files. It contains the notebooks and all the supporting code. The Bucket is a storage service for larger files. It holds the pre-computed results from the extensive parameter sweeps and model optimizations to allow skipping the computationally demanding steps. The documentation of the showcase implementation is collected in the Wiki. The Lab service is an instance of JupyterLab—an interactive computing environment where the notebooks can be run and worked with.
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19 The Jupyter notebooks in this collab will load all required Python modules including Siibra and The Virtual Brain, and the interfaces for launching the computationally demanding parts in the HPC infrastructure.
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21 The virtual ageing study is described in detail in following publication:
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23 M. Lavanga, J. Stumme, B. H. Yalcinkaya, J. Fousek, C. Jockwitz, H. Sheheitli, N. Bittner, M. Hashemi, S. Petkoski, S. Caspers, and V. Jirsa, [[The Virtual Aging Brain: A Model-Driven Explanation for Cognitive Decline in Older Subjects>>url:https://doi.org/10.1101/2022.02.17.480902]].
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29 {{box title="**Contents**"}}
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