Last modified by robing on 2022/03/25 09:55
From version 13.1
edited by robing
on 2020/01/20 13:37
Change comment: There is no comment for this version
To version 14.2
edited by pierstanpaolucci
on 2020/01/20 14:03
Change comment: There is no comment for this version

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1 -XWiki.robing
1 +XWiki.pierstanpaolucci
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34 34  ** stage04_wavefront_detection: [README.md](), [config.yaml]()
35 35  ** stage05_wave_characterization: [README.md](), [config.yaml]()
36 36  
37 -* **Start a Jupyter Hub instance**
37 +* **Start a Jupyter Hub instance (use the URL below in a separate broser page)**
38 38  [[jupyterhub-preview.apps-dev.hbp.eu>>jupyterhub-preview.apps-dev.hbp.eu]]
39 39  
40 40  * **Follow the notebook**
41 -In the jupyter hub, navigate to `drive/Shared with groups/Slow Wave Analysis Pipeline/pipeline/showcase_notebooks/snakemake_collab_test.ipynb`.
41 +In the jupyter hub, navigate to `drive/Shared with groups/Slow Wave Analysis Pipeline/pipeline/showcase_notebooks/run_snakemake_in_collab.ipynb`.
42 42  Follow the notebook to install the required packages into your Python kernel, set the output path, and execute the pipeline with snakemake.
43 -
44 44  * **Coming soon**
45 45  ** Use of KnowledgeGraph API
46 46  ** Provenance Tracking