Last modified by robing on 2022/03/25 09:55
From version 31.1
edited by denker
on 2020/04/06 12:19
Change comment: There is no comment for this version
To version 23.1
edited by denker
on 2020/04/03 16:50
Change comment: There is no comment for this version

Summary

Details

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Title
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1 -SGA2 SP3 UC002 - Slow Wave Analysis Pipeline
1 +Slow Wave Analysis Pipeline
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5 5  = (% style="color:inherit" %)Slow Wave Analysis Pipeline(%%) =
6 6  
7 7  (% class="wikigeneratedid" id="HUseCaseSGA2-SP3-002:IntegratingmultiscaledataA0inareproducibleandadaptablepipeline" %)
8 -(% style="color:inherit; font-size:24px" %)**Use Case SGA2-SP3-002: Integrating multi-scale data in a reproducible and adaptable pipeline**
9 -
10 -To be discussed Author orders, contributions,...:
11 -
12 -Experiments: ...?
13 -
14 -Implementation: Robin Gutzen^^1^^, Elena Pastorelli^^2^^, ...
15 -
16 -Lead: Michael Denker^^1^^, Sonja Grün^^1^^, Pier Stanislao Paolucci^^2^^, Andrew Davison?
17 -
18 -,,1) Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany,,
19 -
20 -,,2) Dipartimento di Fisica, Università di Cagliari and INFN Sezione di Cagliari, Italy,,
21 -
22 -
8 +(% style="color:inherit; font-size:24px" %)Use Case SGA2-SP3-002: Integrating multi-scale data in a reproducible and adaptable pipeline
23 23  )))
24 24  )))
25 25  
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43 43  ** Select 'Copy', and then 'My Library' from the dropdown 'Other Libraries'
44 44  
45 45  * **Start a Jupyter Hub instance **
46 -In another browser, open [[https:~~/~~/lab.ebrains.eu>>https://lab.ebrains.eu]]
47 -
32 +copy the URL to another browser page: 'jupyterhub-preview.apps-dev.hbp.eu'
33 +
48 48  * **Edit the config files**
49 49  Each stage has a config file to specify which analysis/processing blocks to execute and which parameters to use. General and specific information about the blocks and parameters can found in the README and config files. The default values are set for an example dataset (ECoG, anesthetized mouse, IDIBAPS [ref]).
50 50  ** stage01_data_entry: [README.md](), [config.yaml]()
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97 97  
98 98  All text and example data in this collab is licensed under Creative Commons CC-BY 4.0 license. Software code is licensed under a modified BSD license.
99 99  
100 -[[image:https://i.creativecommons.org/l/by/4.0/88x31.png||style="float:left"]]
101 -
102 102  == Acknowledgments ==
103 103  
104 104  This open source software code was developed in part or in whole in the Human Brain Project, funded from the European Union’s Horizon 2020 Framework Programme for Research and Innovation under the Specific Grant Agreement No. 785907 (Human Brain Project SGA2).