Changes for page SGA2 SP3 UC002 KR3.2 - Slow Wave Analysis Pipeline
Last modified by robing on 2022/03/25 09:55
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... ... @@ -5,21 +5,25 @@ 5 5 = (% style="--darkreader-inline-color:inherit; color:inherit" %)Slow Wave Analysis Pipeline(%%) = 6 6 7 7 (% class="wikigeneratedid" id="HUseCaseSGA2-SP3-002:IntegratingmultiscaledataA0inareproducibleandadaptablepipeline" %) 8 -(% style="--darkreader-inline-color:inherit; color:inherit; font-size:24px" %)**Use Case SGA2-SP3-002: Integrating multi-scale data in a reproducible and adaptable pipeline** 8 +(% style="--darkreader-inline-color:inherit; color:inherit; font-size:24px" %)**Use Case SGA2-SP3-002 KR3.2: Integrating multi-scale data in a reproducible and adaptable pipeline** 9 9 10 - TodiscussedAuthororders,contributions,...:10 +Robin Gutzen^^1^^, Giulia De Bonis^^2^^, Elena Pastorelli^^2^^, Cristiano Capone^^2^^, 11 11 12 - Experiments:...?12 +Chiara De Luca^^2^^, Marco Celotto^^2^^, Michael Denker^^1^^, Sonja Grün^^1^^, 13 13 14 - Implementation:Robin Gutzen^^1^^,ElenaPastorelli^^2^^, ...14 +Pier Stanislao Paolucci^^2^^, Andrew Davison^^3^^ 15 15 16 - Lead:MichaelDenker^^1^^,SonjaGrün^^1^^, Pier StanislaoPaolucci^^2^^, Andrew Davison?16 +Experiments: Francesco Pavone^^4^^, Maria-Victoria Sanchez-Vives^^5^^ 17 17 18 18 ,,1) Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany,, 19 19 20 -,,2) Dipartimento di Fisica, Università di Cagliari andINFN Sezione di Roma, Italy,,20 +,,2) INFN Sezione di Roma, Rome, Italy,, 21 21 22 - 22 +,,3) Unité de Neurosciences, Information et Complexité, Neuroinformatics group, CNRS FRE 3693, Gif-sur-Yvette, France,, 23 + 24 +,,4) LENS, University of Florence, 50019 Florence, Italy,, 25 + 26 +,,5) Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain,, 23 23 ))) 24 24 ))) 25 25 ... ... @@ -51,7 +51,7 @@ 51 51 52 52 * Open the Drive from the left menu 53 53 * Select the folders //pipeline// and //datasets,// 54 -and the notebook// 58 +and the notebook// run_snakemake_in_collab.ipynb// 55 55 * Select 'Copy', and then 'My Library' from the dropdown 'Other Libraries' 56 56 57 57 ))) ... ... @@ -108,6 +108,8 @@ 108 108 109 109 == References == 110 110 115 +* De Bonis, Giulia, et al. "Analysis pipeline for extracting features of cortical slow oscillations." //Frontiers in Systems Neuroscience// 13 (2019): 70. 116 +* Celotto, Marco, et al. "Analysis and Model of Cortical Slow Waves Acquired with Optical Techniques." //Methods and Protocols// 3.1 (2020): 14. 111 111 112 112 == License (to discuss) == 113 113