Last modified by robing on 2022/03/25 09:55
From version 43.1
edited by denker
on 2020/04/23 16:39
Change comment: There is no comment for this version
To version 45.1
edited by robing
on 2020/04/24 12:34
Change comment: There is no comment for this version

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1 -XWiki.denker
1 +XWiki.robing
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21 21  
22 22  ,,3) Unité de Neurosciences, Information et Complexité, Neuroinformatics group, CNRS FRE 3693, Gif-sur-Yvette, France,,
23 23  
24 -,,4) LENS,,
24 +,,4) LENS, University of Florence, 50019 Florence, Italy,,
25 25  
26 -,,5) IDIBAPS,,
27 -
28 -
26 +,,5) Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain,,
29 29  )))
30 30  )))
31 31  
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93 93  * **Edit the config files**
94 94  Each stage has a config file to specify which analysis/processing blocks to execute and which parameters to use. Edit the config template files //pipeline/stageXX_<stage_name>/config_template.yaml// according to your dataset and analysis goal, and save them as //pipeline/stageXX_<stage_name>/config.yaml//. A detailed description of the available parameter settings and their meaning is commented in the template files, and a more general description of the working mechanism of each stage can be found in the respective README file //pipeline/stageXX_<stage_name>/README.md//.
95 95  //Links are view-only//
96 -** full pipeline:[[ README.md>>https://drive.ebrains.eu/f/ec474df6919a4089832e/]], config.yaml
94 +** full pipeline:[[ README.md>>https://drive.ebrains.eu/f/ec474df6919a4089832e/]], [[config.yaml>>https://drive.ebrains.eu/f/fd37c5dd8970444fa217/]]
97 97  ** stage01_data_entry: [[README.md>>https://drive.ebrains.eu/f/b46ffe259b3a4a51a277/]], [[config.yaml>>https://drive.ebrains.eu/f/8de751f48d7d47edaec1/]]
98 98  ** stage02_processing: [[README.md>>https://drive.ebrains.eu/f/7f19d89913624425bf63/]], [[config.yaml>>https://drive.ebrains.eu/f/b1607671f6f2468aa43c/]]
99 99  ** stage03_trigger_detection: [[README.md>>https://drive.ebrains.eu/f/94d12860dde84bbab7b1/]], [[config.yaml>>https://drive.ebrains.eu/f/6dfb712d5fa24f4f9fcf/]]
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114 114  
115 115  == References ==
116 116  
115 +* De Bonis, Giulia, et al. "Analysis pipeline for extracting features of cortical slow oscillations." //Frontiers in Systems Neuroscience// 13 (2019): 70.
116 +* Celotto, Marco, et al. "Analysis and Model of Cortical Slow Waves Acquired with Optical Techniques." //Methods and Protocols// 3.1 (2020): 14.
117 117  
118 118  == License (to discuss) ==
119 119