Changes for page SGA2 SP3 UC002 KR3.2 - Slow Wave Analysis Pipeline
Last modified by robing on 2022/03/25 09:55
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... ... @@ -5,25 +5,21 @@ 5 5 = (% style="--darkreader-inline-color:inherit; color:inherit" %)Slow Wave Analysis Pipeline(%%) = 6 6 7 7 (% class="wikigeneratedid" id="HUseCaseSGA2-SP3-002:IntegratingmultiscaledataA0inareproducibleandadaptablepipeline" %) 8 -(% style="--darkreader-inline-color:inherit; color:inherit; font-size:24px" %)**Use Case SGA2-SP3-002 KR3.2: Integrating multi-scale data in a reproducible and adaptable pipeline**8 +(% style="--darkreader-inline-color:inherit; color:inherit; font-size:24px" %)**Use Case SGA2-SP3-002: Integrating multi-scale data in a reproducible and adaptable pipeline** 9 9 10 - RobinGutzen^^1^^,Giulia De Bonis^^2^^, ElenaPastorelli^^2^^,CristianoCapone^^2^^,10 +To be discussed Author orders, contributions,...: 11 11 12 - Chiara DeLuca^^2^^, Marco Celotto^^2^^, Michael Denker^^1^^,Sonja Grün^^1^^,12 +Experiments: ...? 13 13 14 - Pier StanislaoPaolucci^^2^^,AndrewDavison^^3^^14 +Implementation: Robin Gutzen^^1^^, Elena Pastorelli^^2^^, ... 15 15 16 - Experiments:FrancescoPavone^^4^^,Maria-VictoriaSanchez-Vives^^5^^16 +Lead: Michael Denker^^1^^, Sonja Grün^^1^^, Pier Stanislao Paolucci^^2^^, Andrew Davison? 17 17 18 18 ,,1) Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany,, 19 19 20 -,,2) INFN Sezione di Roma, Rome,Italy,,20 +,,2) Dipartimento di Fisica, Università di Cagliari and INFN Sezione di Roma, Italy,, 21 21 22 -,,3) Unité de Neurosciences, Information et Complexité, Neuroinformatics group, CNRS FRE 3693, Gif-sur-Yvette, France,, 23 - 24 -,,4) LENS, University of Florence, 50019 Florence, Italy,, 25 - 26 -,,5) Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain,, 22 + 27 27 ))) 28 28 ))) 29 29 ... ... @@ -55,7 +55,7 @@ 55 55 56 56 * Open the Drive from the left menu 57 57 * Select the folders //pipeline// and //datasets,// 58 -and the notebook// 54 +and the notebook// run_snakemake_in_collab.ipynb// 59 59 * Select 'Copy', and then 'My Library' from the dropdown 'Other Libraries' 60 60 61 61 ))) ... ... @@ -112,8 +112,6 @@ 112 112 113 113 == References == 114 114 115 -* De Bonis, Giulia, et al. "Analysis pipeline for extracting features of cortical slow oscillations." //Frontiers in Systems Neuroscience// 13 (2019): 70. 116 -* Celotto, Marco, et al. "Analysis and Model of Cortical Slow Waves Acquired with Optical Techniques." //Methods and Protocols// 3.1 (2020): 14. 117 117 118 118 == License (to discuss) == 119 119