Changes for page Subcellular Modeling and Simulation services
Last modified by oliviaeriksson on 2022/12/13 14:50
From version 17.1
edited by oliviaeriksson
on 2022/12/13 14:45
on 2022/12/13 14:45
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To version 16.1
edited by oliviaeriksson
on 2022/12/13 14:33
on 2022/12/13 14:33
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... ... @@ -20,7 +20,7 @@ 20 20 21 21 [[image:image-20221213143123-1.png]] 22 22 23 - (% class="small" %)**The Subcellular Model building and Calibration tooland other informationused for calibration are contained within aunified formatbasedonSBtab[1](//Model and data box//). This is the inputtothecalibration(parameter estimation)and analysistools(//Calibration or Analysis box).//Themodelcanalsobe transferredto different other//formats//like SBMLorMOD//(Communication and Other simulations boxes).//Beforecalibration isperformedthe model can be reducedin size//(model reduction).//23 +**The Subcellular Model building and Calibration toolset. **//Model and data box~:// The model together with the experimental data used for calibration are contained within the SBtab format. Here are also information on model parameters, like prior knowledge/assumptions on possible ranges for parameters before parameter estimation/calibration takes place. //Calibration or Analysis box~:// the toolset includes different methods for calibration (estimation) of parameters as well as methods for model analysis, like different kinds of sensitivity analysis methods. The information retrieved within this box are fed back to the SBtab files of the //Model and data box//. //Communication and Other simulations boxes: //For interoperability, the toolset also consists of functionalities for transferring the SBtab files to other model formats like SBML. By this the model can for example be run in the Subcellular Simulation Webapp (see below). It is also possible to perform //model reduction //before the calibration takes place. 24 24 25 25 [1] Lubitz, T., Hahn, J., Bergmann, F.T., Noor, E.,. Klipp, E, Liebermeister, W. (2016). SBtab: A flexible table format for data exchange in systems biology. Bioinformatics, 15;32(16), 2559-61. 26 26