Changes for page EBRAINS Knowledge Graph guide for software curation
Last modified by adavison on 2024/11/13 11:30
From version 38.1
edited by patriziaduhr
on 2022/11/13 09:37
on 2022/11/13 09:37
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... ... @@ -1,5 +1,5 @@ 1 1 (% class="wikigeneratedid" %) 2 -**For any questions or support directly reach out to [[Jan Gründling>>mailto:gruendling@uni-trier.de]].** 2 +**~*~*~* This Guide is not complete yet and needs further extension. It is in an alpha version. For any questions or support directly reach out to [[Jan Gründling>>mailto:gruendling@uni-trier.de]].~*~**** 3 3 4 4 5 5 (% class="wikigeneratedid" %) ... ... @@ -7,46 +7,37 @@ 7 7 8 8 == How to enter software metadata manually == 9 9 10 - Youwillreceive anemailafterthecuratorhascreateda spaceforyouin theKnowledgeGraph. Thisemailcontainsa linkto asoftwareinstanceand asoftwareversioninstancein yourSpace. Thesearealready linkedtoeachother(bytheattribute"HasVersion" of thesoftwareinstance).10 +To manually input meta data of your software into the KG, you use a tool called "KG Editor". The KG Editor can be reached at [[HBP Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]]. Just log in with your HBP credentials. 11 11 12 - **Beforeexplainingtheeditingprocess,herearesome helpfullinks:**12 +After you are logged in, you are probably prompted to choose a space in a view like below: 13 13 14 -* A description of the fields of the software and software version instances and values that these fields may take: [[https:~~/~~/humanbrainproject.github.io/openMINDS/v2/core/v3/products/softwareVersion.html>>url:https://humanbrainproject.github.io/openMINDS/v2/core/v3/products/softwareVersion.html]] and [[https:~~/~~/humanbrainproject.github.io/openMINDS/v2/core/v3/products/software.html>>url:https://humanbrainproject.github.io/openMINDS/v2/core/v3/products/software.html]] 15 -* additional information for each attribute: [[https:~~/~~/github.com/bweyers/HBPVisCatalogue/wiki/Attribute-Descriptions>>url:https://github.com/bweyers/HBPVisCatalogue/wiki/Attribute-Descriptions]] 16 -* a detailed description of the software features: [[https:~~/~~/github.com/bweyers/HBPVisCatalogue/wiki/Identified-Software-Features>>url:https://github.com/bweyers/HBPVisCatalogue/wiki/Identified-Software-Features]] 14 +[[image:image-20220323113258-3.png||height="386" width="681"]] 17 17 18 - **Editingthe software and softwareversion instances:**16 +From the available choices (should not be too many in your case) choose the one that corresponds to the title of your software. Something like## swcuration-{your_software_name} ##should apply. 19 19 20 - To registeryour software, youwill needto input information for the instance"Software"and for "Softwareversion". Afterclickingthe linksinouremail,you willseeaninstanceeditor view like below:18 +After that, you see the view below. now click on the little magnifyer glass symbol at the top. 21 21 22 -[[image: guide1.JPG]]20 +[[image:image-20220323120123-6.png||height="412" width="1032"]] 23 23 24 -A s you can see inthescreenshotabove, some fields are marked withn asterisk(*).Thesearerequired. Keep in mindthat this ishow you presentyour software publicly to potentialend-users or otherresearchers. Therefore itwould be nice if asmany fields as possibleare filled in.22 +After that, you see this list on the left side: 25 25 26 - Some fields can beof different types, such as the field "developer" and "Full documentation". In thecase of developer it is possible to enter a person or an organisation. Thepossible types are selectable on the rightabove the respective field, as showninthe following screenshots:24 +[[image:image-20220323121426-1.png||height="202" width="258"]] 27 27 28 -[[image:guideDev.JPG||height="109" width="600"]] 29 29 30 - [[image:guide21.JPG||height="142"width="600"]]27 +To register your software, you will need to create one instance "Software" and one or more instances "Software version". To create instances, just click the small +button that appears when you are hovering over the respective list entry. We recommed starting with "Software". After clicking the plus icon you will see a view like below: 31 31 32 - For example,if you want to create a new person, an editingfield opens in therightcolumn of theinstance editor view as shown in the following screenshot.29 +[[image:image-20220323120955-9.png||height="802" width="712"]] 33 33 34 -[[image:guide6.JPG]] 35 35 36 - Ifyou are notsurewhichtype touse,please refer tothedescriptionslinked above orcontactthe curator.32 +Now you can start entering the information on your data! Fields marked with an asterisk (*) are required. When you arrive at the "Has version" field, you can create one or more versions of your software to be curated. 37 37 38 -After you have entered your information on the software, **do not forget to save your changes(see screenshot below) and contact the curator.34 +After you have entered the software, **do not forget to save your changes!** 39 39 40 -[[image: guide4.JPG||height="189" width="400"]]36 +[[image:image-20220323121238-10.png||height="170" width="382"]] 41 41 42 -The curators will check the new software instances and move them to the correct space. 43 43 44 - ===HowtoupdateanxistingSoftwareinstances ===39 +That's it. When you are done, just contact the curators via your ticket. 45 45 46 -If you have registered a software previously, updating means adding a new instance of type "Software version". Curators will later link it to the existing instance of type "Software". 47 - 48 -To make updating easier, we have already placed a copy of your last software version instance in the KG space that was created for you. You can use that copy and just change the fields that require changes. Again - if you made all changes that you consider necessary, let the curator know via email or the ticket assigned with this case. 49 - 50 50 == How to upload software metadata programmatically == 51 51 52 52 To create a valid jsonld file, please use the [[API>>https://core.kg.ebrains.eu/swagger-ui/index.html?configUrl=/v3/api-docs/swagger-config]]. ... ... @@ -56,4 +56,4 @@ 56 56 57 57 Before using it, you need to authorize, using the "Authorize" button found in the top right corner of the API documentation (see below) or by using a service account. 58 58 59 -[[image:image-20220323111341-2.png ||height="74" width="186"]]50 +[[image:image-20220323111341-2.png]]
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