Last modified by spreizer on 2025/08/26 09:19
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1 -EBRAINS Swedish Node Workshop 2025: NEST Tutorials
1 +Swedish Node: NEST Tutorials
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2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= NEST Tutorials =
5 += My Collab's Extended Title =
6 6  
7 -EBRAINS Swedish Node, Stockholm, 25/08/25 - 27/08/25
7 +My collab's subtitle
8 8  )))
9 9  )))
10 10  
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12 12  (((
13 13  (% class="col-xs-12 col-sm-8" %)
14 14  (((
15 -== From single-cell modeling to large-scale network dynamics with NEST Simulator ==
15 += What can I find here? =
16 16  
17 -**Instructor**: Sebastian Spreizer, PhD, University of Trier and Research Center Jülich
17 +* Notice how the table of contents on the right
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19 +* to hold this page's headers
18 18  
19 -- [[Tutorial abstract>>url:https://wiki.ebrains.eu/bin/view/Collabs/swedish-node-nest-tutorials/About/]]
21 += Who has access? =
20 20  
21 -
22 -The tutorial is composed of three parts in which the user learns to simulate with NEST step by step.
23 -
24 -
25 -=== Time schedule ===
26 -
27 -|(% style="width:84px" %)9 - 11|(% style="width:235px" %)NEST Desktop|(% style="width:541px" %)[[https:~~/~~/nest-desktop.readthedocs.org/>>https://nest-desktop.readthedocs.org/]]
28 -|(% style="width:84px" %)12 - 15|(% style="width:235px" %)NEST Simulator|(% style="width:541px" %)[[https:~~/~~/nest-simulator.readthedocs.org/>>https://nest-simulator.readthedocs.org/]]
29 -|(% style="width:84px" %)15 - 18|(% style="width:235px" %)NESTML|(% style="width:541px" %)[[https:~~/~~/nestml.readthedocs.org/>>https://nestml.readthedocs.org/]]
30 -
31 -=== 1) NEST Desktop ===
32 -
33 -The first part of the tutorial, we look at NEST Desktop.  As a goal we will create and analyze a balanced two-population network.
34 -
35 -* [[https:~~/~~/nest-desktop.apps.ebrains.eu/#/>>https://nest-desktop.apps.ebrains.eu/#/]]
36 -* [[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/nest-desktop>>https://wiki.ebrains.eu/bin/view/Collabs/nest-desktop]]
37 -
38 -=== 2) NEST Simulator ===
39 -
40 -The tutorial will then turn to Jupyter (Python) notebooks where we will start by creating spiking neurons. Here, we learn advanced steps to write code with NEST Simulation syntax. The scripting codes allow us to customize sophisticated use cases with NEST simulations. How to run examples on EBRAINS lab can be found here:
41 -
42 -* [[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/nest-simulator-examples/>>https://wiki.ebrains.eu/bin/view/Collabs/nest-simulator-examples/]]
43 -
44 -=== 3) NESTML ===
45 -
46 -The last part is using NESTML to create custom neuron and synapse models for NEST Simulator. A functional plasticity rule will then be introduced into the balanced E/I network to implement a biologically realistic version of reinforcement learning. This will be done by formulating the learning model in the NESTML language syntax, and using the associated toolchain to generate code for NEST [4].
47 -
48 -* [[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/nestml-tutorials>>https://wiki.ebrains.eu/bin/view/Collabs/nestml-tutorials]]
49 -
50 -
23 +Describe the audience of this collab.
51 51  )))
52 52  
53 53  
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