Last modified by spreizer on 2025/08/26 09:19
From version 37.1
edited by spreizer
on 2025/08/23 20:00
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To version 23.1
edited by spreizer
on 2025/07/30 11:45
Change comment: There is no comment for this version

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4 4  (((
5 5  = NEST Tutorials =
6 6  
7 -EBRAINS Swedish Node Workshop, Stockholm, 26/08/25
7 +EBRAINS Swedish Node, Stockholm, 25/08/25 - 27/08/25
8 8  )))
9 9  )))
10 10  
... ... @@ -14,7 +14,6 @@
14 14  (((
15 15  == From single-cell modeling to large-scale network dynamics with NEST Simulator ==
16 16  
17 -
18 18  **Instructor**: Sebastian Spreizer, PhD, University of Trier and Research Center Jülich
19 19  
20 20  - [[Tutorial abstract>>url:https://wiki.ebrains.eu/bin/view/Collabs/swedish-node-nest-tutorials/About/]]
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25 25  
26 26  === Time schedule ===
27 27  
28 -|(% style="width:191px" %)10 - 10.30|(% style="width:220px" %)Introduction|(% style="width:422px" %)
29 -|(% style="width:191px" %)10.30 - 12|(% style="width:220px" %)NEST Desktop|(% style="width:422px" %)[[https:~~/~~/nest-desktop.readthedocs.org/>>https://nest-desktop.readthedocs.org/]]
30 -|(% style="width:191px" %)13 - 14.30|(% style="width:220px" %)NEST Simulator|(% style="width:422px" %)[[https:~~/~~/nest-simulator.readthedocs.org/>>https://nest-simulator.readthedocs.org/]]
31 -|(% style="width:191px" %)15 - 16.30|(% style="width:220px" %)NESTML|(% style="width:422px" %)[[https:~~/~~/nestml.readthedocs.org/>>https://nestml.readthedocs.org/]]
27 +|(% style="width:84px" %)9 - 11|(% style="width:235px" %)NEST Desktop|(% style="width:541px" %)[[https:~~/~~/nest-desktop.readthedocs.org/>>https://nest-desktop.readthedocs.org/]]
28 +|(% style="width:84px" %)12 - 15|(% style="width:235px" %)NEST Simulator|(% style="width:541px" %)[[https:~~/~~/nest-simulator.readthedocs.org/>>https://nest-simulator.readthedocs.org/]]
29 +|(% style="width:84px" %)15 - 18|(% style="width:235px" %)NESTML|(% style="width:541px" %)[[https:~~/~~/nestml.readthedocs.org/>>https://nestml.readthedocs.org/]]
32 32  
33 33  === 1) NEST Desktop ===
34 34  
35 35  The first part of the tutorial, we look at NEST Desktop.  As a goal we will create and analyze a balanced two-population network.
36 36  
37 -* [[https:~~/~~/nest-desktop.apps.ebrains.eu/>>https://nest-desktop.apps.ebrains.eu/]]
35 +* [[https:~~/~~/nest-desktop.apps.ebrains.eu/#/>>https://nest-desktop.apps.ebrains.eu/#/]]
38 38  * [[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/nest-desktop>>https://wiki.ebrains.eu/bin/view/Collabs/nest-desktop]]
39 39  
40 40  === 2) NEST Simulator ===
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45 45  
46 46  === 3) NESTML ===
47 47  
48 -The last part is using NESTML to create custom neuron and synapse models for NEST Simulator. This will be done by formulating the learning model in the NESTML language syntax, and using the associated toolchain to generate code for NEST Simulator.
46 +The last part is using NESTML to create custom neuron and synapse models for NEST Simulator. A functional plasticity rule will then be introduced into the balanced E/I network to implement a biologically realistic version of reinforcement learning. This will be done by formulating the learning model in the NESTML language syntax, and using the associated toolchain to generate code for NEST [4].
49 49  
50 50  * [[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/nestml-tutorials>>https://wiki.ebrains.eu/bin/view/Collabs/nestml-tutorials]]
51 51  
52 -
53 -
54 -== How to run NESTML tutorials on EBRAINS lab? ==
55 -
56 -1. Go to [[https:~~/~~/lab.ebrains.eu>>https://lab.ebrains.eu]](((
57 57  
58 58  )))
59 -1. (((
60 -Next, clone a repo from the remote Git repository "[[https:~~/~~/gitlab.ebrains.eu/spreizer/nest-tutorials-2025.git>>https://gitlab.ebrains.eu/spreizer/nest-tutorials-2025.git]]" (See red arrow).
61 61  
62 62  
63 -[[image:1753784762571-499.png||data-xwiki-image-style-alignment="center"]]
64 -
65 -
66 -{{info}}
67 -If you want to have it persistently, cloned it into your drive folder "/drive/My Libraries/".
68 -{{/info}}
69 -
70 -
71 -)))
72 -1. (((
73 -After cloning, you can find tutorials in respective folders.
74 -
75 -
76 -[[image:1753784886260-197.png||data-xwiki-image-style-alignment="center"]]
77 -
78 -
79 -)))
80 -1. (((
81 -When you start a notebook, select kernel: "EBRAINS-25.02" (or later).
82 -
83 -
84 -[[image:1753786904178-861.png||data-xwiki-image-style-alignment="center"]]
85 -
86 -
87 -)))
88 -1. Have fun with it!
89 -)))
90 -
91 -
92 -
93 -[[image:https://www.ebrains.eu/flags/4x3/se.svg||alt="Sweden's flag" data-xwiki-image-style-alignment="center" height="188" width="250"]]
94 -
95 -
96 96  (% class="col-xs-12 col-sm-4" %)
97 97  (((
98 98  {{box title="**Contents**"}}