Last modified by spreizer on 2025/08/26 09:19
From version 40.1
edited by spreizer
on 2025/08/23 20:12
Change comment: There is no comment for this version
To version 32.1
edited by spreizer
on 2025/07/30 12:26
Change comment: There is no comment for this version

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... ... @@ -4,7 +4,7 @@
4 4  (((
5 5  = NEST Tutorials =
6 6  
7 -EBRAINS Swedish Node Workshop, Stockholm, 26/08/25
7 +EBRAINS Swedish Node, Stockholm, 25/08/25 - 27/08/25
8 8  )))
9 9  )))
10 10  
... ... @@ -12,8 +12,7 @@
12 12  (((
13 13  (% class="col-xs-12 col-sm-8" %)
14 14  (((
15 -(% class="wikigeneratedid" id="HFromsingle-cellmodelingtolarge-scalenetworkdynamicswithNESTSimulator" %)
16 -**From single-cell modeling to large-scale network dynamics with NEST Simulator**
15 +== From single-cell modeling to large-scale network dynamics with NEST Simulator ==
17 17  
18 18  
19 19  **Instructor**: Sebastian Spreizer, PhD, University of Trier and Research Center Jülich
... ... @@ -26,67 +26,30 @@
26 26  
27 27  === Time schedule ===
28 28  
29 -|(% style="width:191px" %)10 - 10.30|(% style="width:220px" %)Introduction|(% style="width:422px" %)
30 -|(% style="width:191px" %)10.30 - 12|(% style="width:220px" %)NEST Desktop|(% style="width:422px" %)[[https:~~/~~/nest-desktop.readthedocs.org/>>https://nest-desktop.readthedocs.org/]]
31 -|(% style="width:191px" %)13 - 14.30|(% style="width:220px" %)NEST Simulator|(% style="width:422px" %)[[https:~~/~~/nest-simulator.readthedocs.org/>>https://nest-simulator.readthedocs.org/]]
32 -|(% style="width:191px" %)15 - 16.30|(% style="width:220px" %)NESTML|(% style="width:422px" %)[[https:~~/~~/nestml.readthedocs.org/>>https://nestml.readthedocs.org/]]
28 +|(% style="width:84px" %)9 - 11|(% style="width:235px" %)NEST Desktop|(% style="width:541px" %)[[https:~~/~~/nest-desktop.readthedocs.org/>>https://nest-desktop.readthedocs.org/]]
29 +|(% style="width:84px" %)12 - 15|(% style="width:235px" %)NEST Simulator|(% style="width:541px" %)[[https:~~/~~/nest-simulator.readthedocs.org/>>https://nest-simulator.readthedocs.org/]]
30 +|(% style="width:84px" %)15 - 18|(% style="width:235px" %)NESTML|(% style="width:541px" %)[[https:~~/~~/nestml.readthedocs.org/>>https://nestml.readthedocs.org/]]
33 33  
34 -=== (% style="color:#1a202c; font-family:inherit; font-size:max(23px, min(27px, 15.8889px + 0.925926vw))" %)How to run NEST tutorials on EBRAINS lab?(%%) ===
32 +=== 1) NEST Desktop ===
35 35  
36 -1. (((
37 -Go to [[https:~~/~~/lab.jsc.ebrains.eu>>https://lab.jsc.ebrains.eu]]
38 -)))
39 -1. Change drive folder to `/drive/My Libraries/`.
40 -1. (((
41 -Next, clone a repo from the remote Git repository "[[https:~~/~~/gitlab.ebrains.eu/spreizer/nest-tutorials-2025.git>>https://gitlab.ebrains.eu/spreizer/nest-tutorials-2025.git]]" (See red arrow).
42 -
43 -
44 -[[image:https://wiki.ebrains.eu/bin/download/Collabs/nestml-tutorials/WebHome/1753784762571-499.png?rev=1.1||alt="1753784762571-499.png" data-xwiki-image-style-alignment="center"]]
45 -
46 -
47 -)))
48 -1. (((
49 -After cloning, you can find tutorials in respective folders.
50 -
51 -
52 -
53 -)))
54 -1. (((
55 -When you start a notebook, select kernel: "EBRAINS-25.02" (or later).
56 -
57 -
58 -[[image:https://wiki.ebrains.eu/bin/download/Collabs/nestml-tutorials/WebHome/1753786904178-861.png?rev=1.1||alt="1753786904178-861.png" data-xwiki-image-style-alignment="center"]]
59 -
60 -
61 -)))
62 -1. Have fun with it!
63 -
64 -=== Modules ===
65 -
66 -(% class="wikigeneratedid" %)
67 -**1) NEST Desktop**
68 -
69 69  The first part of the tutorial, we look at NEST Desktop.  As a goal we will create and analyze a balanced two-population network.
70 70  
71 -[[https:~~/~~/nest-desktop.apps.ebrains.eu/>>https://nest-desktop.apps.ebrains.eu/]]
36 +* [[https:~~/~~/nest-desktop.apps.ebrains.eu/>>https://nest-desktop.apps.ebrains.eu/]]
37 +* [[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/nest-desktop>>https://wiki.ebrains.eu/bin/view/Collabs/nest-desktop]]
72 72  
73 -More information: [[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/nest-desktop>>https://wiki.ebrains.eu/bin/view/Collabs/nest-desktop]]
39 +=== 2) NEST Simulator ===
74 74  
75 -
76 -(% class="wikigeneratedid" id="H329NESTML" %)
77 -**2) NEST Simulator**
78 -
79 79  The tutorial will then turn to Jupyter (Python) notebooks where we will start by creating spiking neurons. Here, we learn advanced steps to write code with NEST Simulation syntax. The scripting codes allow us to customize sophisticated use cases with NEST simulations. How to run examples on EBRAINS lab can be found here:
80 80  
81 -More examples: [[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/nest-simulator-examples/>>https://wiki.ebrains.eu/bin/view/Collabs/nest-simulator-examples/]]
43 +* [[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/nest-simulator-examples/>>https://wiki.ebrains.eu/bin/view/Collabs/nest-simulator-examples/]]
82 82  
45 +=== 3) NESTML ===
83 83  
84 -**3) NESTML**
85 -
86 -
87 87  The last part is using NESTML to create custom neuron and synapse models for NEST Simulator. This will be done by formulating the learning model in the NESTML language syntax, and using the associated toolchain to generate code for NEST Simulator.
88 88  
89 -More tutorials: [[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/nestml-tutorials>>https://wiki.ebrains.eu/bin/view/Collabs/nestml-tutorials]]
49 +* [[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/nestml-tutorials>>https://wiki.ebrains.eu/bin/view/Collabs/nestml-tutorials]]
50 +
51 +
90 90  )))
91 91  
92 92