Last modified by spreizer on 2025/08/26 09:19
From version 45.1
edited by spreizer
on 2025/08/23 20:20
Change comment: There is no comment for this version
To version 54.1
edited by spreizer
on 2025/08/26 09:19
Change comment: There is no comment for this version

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18 18  
19 19  **Instructor**: Sebastian Spreizer, PhD, University of Trier and Research Center Jülich
20 20  
21 +
22 +- Workshop: [[https:~~/~~/www.incf.org/incf-serc-ebrains-sweden-workshop-fair-neuroscience>>https://www.incf.org/incf-serc-ebrains-sweden-workshop-fair-neuroscience]]
23 +
21 21  - [[Tutorial abstract>>url:https://wiki.ebrains.eu/bin/view/Collabs/swedish-node-nest-tutorials/About/]]
22 22  
26 +- Tutorial materials: [[https:~~/~~/gitlab.ebrains.eu/spreizer/nest-tutorials-2025>>url:https://gitlab.ebrains.eu/spreizer/nest-tutorials-2025.git]]
23 23  
28 +
24 24  The tutorial is composed of three modules in which the user learns to simulate with NEST step by step.
25 25  
26 26  
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27 27  === Time schedule ===
28 28  
29 29  |(% style="width:191px" %)10 - 10.30|(% style="width:220px" %)Introduction|(% style="width:422px" %)
30 -|(% style="width:191px" %)10.30 - 12|(% style="width:220px" %)NEST Desktop|(% style="width:422px" %)[[https:~~/~~/nest-desktop.readthedocs.org/>>https://nest-desktop.readthedocs.org/]]
31 -|(% style="width:191px" %)13 - 14.30|(% style="width:220px" %)NEST Simulator|(% style="width:422px" %)[[https:~~/~~/nest-simulator.readthedocs.org/>>https://nest-simulator.readthedocs.org/]]
32 -|(% style="width:191px" %)15 - 16.30|(% style="width:220px" %)NESTML|(% style="width:422px" %)[[https:~~/~~/nestml.readthedocs.org/>>https://nestml.readthedocs.org/]]
35 +|(% style="width:191px" %)10.30 - 12|(% style="width:220px" %)NEST Desktop|(% style="width:422px" %)[[https:~~/~~/nest-desktop.apps.ebrains.eu/>>https://nest-desktop.apps.ebrains.eu/]]
36 +|(% style="width:191px" %)13 - 14.30|(% style="width:220px" %)NEST Simulator|(% style="width:422px" %)[[https:~~/~~/lab.jsc.ebrains.eu>>https://lab.jsc.ebrains.eu]]
37 +|(% style="width:191px" %)15 - 16.30|(% style="width:220px" %)NESTML|(% style="width:422px" %)[[https:~~/~~/lab.jsc.ebrains.eu>>https://lab.jsc.ebrains.eu]]
33 33  
34 -(% class="wikigeneratedid" %)
35 -Link for NEST Desktop: [[https:~~/~~/nest-desktop.apps.ebrains.eu/>>https://nest-desktop.apps.ebrains.eu/]]
39 +=== EBRAINS Lab ===
36 36  
37 -=== (% style="color:#1a202c; font-family:inherit; font-size:max(23px, min(27px, 15.8889px + 0.925926vw))" %)How to run NEST tutorials on EBRAINS lab?(%%) ===
41 +How to get NEST tutorials on EBRAINS Lab?
38 38  
39 39  1. (((
40 40  Go to [[https:~~/~~/lab.jsc.ebrains.eu>>https://lab.jsc.ebrains.eu]]
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41 41  )))
42 42  1. Change drive folder to `/drive/My Libraries/`.
43 43  1. (((
44 -Next, clone a repo from the remote Git repository "[[https:~~/~~/gitlab.ebrains.eu/spreizer/nest-tutorials-2025.git>>https://gitlab.ebrains.eu/spreizer/nest-tutorials-2025.git]]" (Click on [[image:1755972938026-462.png||height="30" width="28"]]).
48 +Next, clone a repo from the remote Git repository "https:~/~/gitlab.ebrains.eu/spreizer/nest-tutorials-2025" (Click on [[image:1755972938026-462.png||height="30" width="28"]]).
45 45  
46 46  
47 47  [[image:1755972871032-845.png||data-xwiki-image-style-alignment="center"]]
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50 50  )))
51 51  1. (((
52 52  After cloning, you find tutorials in `nest-tutorials-2025` folders.
53 -
54 -
55 55  )))
56 56  1. (((
57 57  When you start a notebook, select kernel: "EBRAINS-25.02" (or later).
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71 71  
72 72  The first part of the tutorial, we look at NEST Desktop.  As a goal we will create and analyze a balanced two-population network.
73 73  
76 +Documentation: [[https:~~/~~/nest-desktop.readthedocs.io>>https://nest-desktop.readthedocs.io]]
77 +
74 74  More information: [[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/nest-desktop>>https://wiki.ebrains.eu/bin/view/Collabs/nest-desktop]]
75 75  
76 76  
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77 77  (% class="wikigeneratedid" id="H329NESTML" %)
78 78  **2) NEST Simulator**
79 79  
80 -The tutorial will then turn to Jupyter (Python) notebooks where we will start by creating spiking neurons. Here, we learn advanced steps to write code with NEST Simulation syntax. The scripting codes allow us to customize sophisticated use cases with NEST simulations. How to run examples on EBRAINS lab can be found here:
84 +The tutorial will then turn to Jupyter (Python) notebooks where we will start by creating spiking neurons. Here, we learn advanced steps to write code with NEST Simulation syntax. The scripting codes allow us to customize sophisticated use cases with NEST simulations.
81 81  
86 +Documentation: [[https:~~/~~/nest-simulator.readthedocs.io>>https://nest-simulator.readthedocs.io]]
87 +
82 82  More examples: [[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/nest-simulator-examples/>>https://wiki.ebrains.eu/bin/view/Collabs/nest-simulator-examples/]]
83 83  
84 84  
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87 87  
88 88  The last part is using NESTML to create custom neuron and synapse models for NEST Simulator. This will be done by formulating the learning model in the NESTML language syntax, and using the associated toolchain to generate code for NEST Simulator.
89 89  
96 +Documentation: [[https:~~/~~/nestml.readthedocs.io>>https://nestml.readthedocs.io]]
97 +
90 90  More tutorials: [[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/nestml-tutorials>>https://wiki.ebrains.eu/bin/view/Collabs/nestml-tutorials]]
91 91  )))
92 92