Last modified by spreizer on 2025/08/26 09:19
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edited by spreizer
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edited by spreizer
on 2025/07/30 11:06
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Summary

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Title
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1 -Swedish Node: NEST Tutorials
1 +EBRAINS Swedish Node Workshop 2025: NEST Tutorials
Content
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2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= My Collab's Extended Title =
5 += NEST Tutorials =
6 6  
7 -My collab's subtitle
7 +EBRAINS Swedish Node, Stockholm, 25/08/25 - 27/08/25
8 8  )))
9 9  )))
10 10  
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12 12  (((
13 13  (% class="col-xs-12 col-sm-8" %)
14 14  (((
15 -= What can I find here? =
15 +== From single-cell modeling to large-scale network dynamics with NEST Simulator ==
16 16  
17 -* Notice how the table of contents on the right
18 -* is automatically updated
19 -* to hold this page's headers
17 +**Instructor**: Sebastian Spreizer, PhD, University of Trier and Research Center Jülich
20 20  
21 -= Who has access? =
19 +- [[Abstract>>url:https://wiki.ebrains.eu/bin/view/Collabs/swedish-node-nest-tutorials/About/]]
22 22  
23 -Describe the audience of this collab.
21 +
22 +The tutorial is composed of three parts in which the user learns to simulate with NEST step by step.
23 +
24 +
25 +=== Time schedule ===
26 +
27 +|(% style="width:84px" %)9 - 11|(% style="width:235px" %)NEST Desktop|(% style="width:541px" %)[[https:~~/~~/nest-desktop.readthedocs.org/>>https://nest-desktop.readthedocs.org/]]
28 +|(% style="width:84px" %)12 - 15|(% style="width:235px" %)NEST Simulator|(% style="width:541px" %)[[https:~~/~~/nest-simulator.readthedocs.org/>>https://nest-simulator.readthedocs.org/]]
29 +|(% style="width:84px" %)15 - 18|(% style="width:235px" %)NESTML|(% style="width:541px" %)[[https:~~/~~/nestml.readthedocs.org/>>https://nestml.readthedocs.org/]]
30 +
31 +=== ===
32 +
33 +=== 1) NEST Desktop ===
34 +
35 +The first part of the tutorial, we look at NEST Desktop.  As a goal we will create and analyze a balanced two-population network.
36 +
37 +* [[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/nest-desktop>>https://wiki.ebrains.eu/bin/view/Collabs/nest-desktop]]
38 +
39 +
40 +=== 2) NEST Simulator ===
41 +
42 +The tutorial will then turn to Jupyter (Python) notebooks where we will start by creating a spiking neurons. Here, we learn advanced steps to write code with NEST Simulation syntax. The scripting codes allow us to customize sophisticated use cases with NEST simulations. Examples are:
43 +
44 +* neuronal dynamics
45 +* large scale networks,
46 +* networks of spatial neurons
47 +* using plasticity
48 +
49 +
50 +=== 3) NESTML ===
51 +
52 +The last part is using NESTML to create custom neuron and synapse models for NEST Simulator. A functional plasticity rule will then be introduced into the balanced E/I network to implement a biologically realistic version of reinforcement learning. This will be done by formulating the learning model in the NESTML language syntax, and using the associated toolchain to generate code for NEST [4].
53 +
54 +* [[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/nestml-tutorials>>https://wiki.ebrains.eu/bin/view/Collabs/nestml-tutorials]]
55 +
56 +
24 24  )))
25 25  
26 26