Wiki source code of Releases

Version 177.1 by mmorgan on 2023/01/27 11:25
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mmorgan 177.1 1 (% class="wikigeneratedid" %)
2 === **Collaboratory Wiki update (2023-01-27)** ===
chaney08 174.1 3
4 **Collaboratory.Wiki**
5
mmorgan 177.1 6 * The Wiki service will be updated. Recent changes to the service have disabled the listing of OIDC service accounts which are granted access to collabs. This update is fixing this issue.
7
8 === **Collaboratory 2 release (2023-01-24) (Released)** ===
9
10 **Collaboratory.Wiki**
11
mmorgan 175.1 12 * The collab deletion process has been updated. 
chaney08 174.1 13 ** Users are now asked to type in the name of the collab they are deleting to ensure they mean to delete the entire collab.
14 ** Users are now informed when a collab is deleted.
chaney08 176.1 15 * More collab context is being added to the Lab if you access the Lab via a collab iframe. These will appear alongside other [[environment variables>>doc:Collabs.the-collaboratory.Documentation Lab.FAQ.Creating and accessing environment variables .WebHome]]. (This part of the release was delayed)
mmorgan 175.1 16 * On smaller screens, the login button and the kebab menu now appear at the top of the page as on larger screens.
chaney08 174.1 17
18 **Collaboratory.IAM**
19
mmorgan 175.1 20 * Verification emails are already sent out 2 weeks before a user has to revalidate their email address. The content of that email is being updated.
chaney08 174.1 21
mmorgan 173.1 22 === **Collaboratory 2 release (2022-12-30) (Released)** ===
mmorgan 172.1 23
24 We are deactivating the search feature in the Wiki service for users that are not authenticated for security reasons. No downtime is expected.
25
mmorgan 171.1 26 === **Collaboratory 2 release (2022-12-20) (Released)** ===
hbpadmin 163.1 27
mmorgan 167.1 28 We are deploying a fix to the Wiki service to reduce the amount of information the Collaboratory Wiki stores and displays about EBRAINS users.
29
30 * Wiki content edited by a user will appear as edited by that user's first name and first initial of last name. EBRAINS users that are logged in can click on the name to view the user's profile with full name.
mmorgan 168.1 31 * The user's email address is removed from the user's profile in the Wiki service. It remains visible in PLUS for users that have created/validated their PLUS profile.
mmorgan 167.1 32
mmorgan 169.1 33 After the first few minutes, the Wiki service will likely be accessible as we remove metadata from the service, but we may need to bring down the service if we encounter issues. Avoid editing content during the maintenance until the end of maintenance is notified in a banner or here.
mmorgan 167.1 34
mmorgan 170.1 35 We've extended the estimated maintenance time to 45 minutes as the backup procedure took longer than expected.
36
mmorgan 171.1 37 The maintenance is finished.
38
mmorgan 167.1 39 === **Collaboratory 2 release (2022-12-13) (Released)** ===
40
chaney08 164.1 41 This release contains fixes for minor issues discovered in the OIDC client manager app and Lab environment variables.
hbpadmin 163.1 42
chaney08 166.1 43 The new OIDC Client manager app can be found at the following URL: [[https:~~/~~/wiki.ebrains.eu/bin/view/OIDC/>>https://wiki.ebrains.eu/bin/view/OIDC/]]. Please note you can only access this if you are a member of the [[Service developers group>>https://wiki.ebrains.eu/bin/view/Identity/#/groups/app-collaboratory-iam--service-providers]].
44
chaney08 160.1 45 === **Collaboratory 2 release (2022-12-07) (Released)** ===
hbpadmin 149.1 46
chaney08 153.1 47 **Collaboratory.Lab **
48
49 * Dynamic environment variables
hbpadmin 157.1 50 ** Notebook name, collab name and site hosting your Lab session will now always be available in a notebook, regardless of how you navigate to a notebook.
chaney08 162.1 51 ** COLLAB_NAME has been renamed to COLLAB_TITLE to reflect its value.
hbpadmin 157.1 52 * The Virtual Brain Library extension has been updated.
chaney08 153.1 53
54 **Collaboratory.Wiki**
55
chaney08 166.1 56 * The new [[OIDC client>>doc:Collabs.pauls-test-collab.Documentation IAM.FAQ.OIDC Clients explained.WebHome]] manager app is deployed to production ([[Found here>>https://wiki.ebrains.eu/bin/view/OIDC/]]). This app is for EBRAINS service developers and provides a UI where previously only an API was available. Its functionality includes:
hbpadmin 157.1 57 ** Create new OIDC clients via the new UI
58 ** Find a full list of your existing OIDC clients
59 ** Easily edit and update any OIDC clients you have
messines 159.1 60 ** NOTE: The client list does not show clients that you are a maintainer of, however, you can access the OIDC Client manager of a client by entering the clientId into the URL
hbpadmin 157.1 61 * Add the possibility for OIDC client maintainers to add the service account related to the OIDC client to a [[collab's Team>>doc:Collabs.the-collaboratory.Documentation IAM.FAQ.Adding a service account to a Collab Team or a Group.WebHome]]
62 * Certain special characters were causing issues when put into a collab name, you can no longer use these special characters in a name.
63 * New field "has_bucket" was added to the API response describing collab. This allows users to quickly and easily see if a collab has a Bucket associated with it as a bucket is optional in a collab.
chaney08 165.1 64 * When using the collab search page, you can now include filters in the URL. E.g [[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/#favorite=true>>https://wiki.ebrains.eu/bin/view/Collabs/#favorite=true]] will have the favourite filter selected by default when visiting the link
chaney08 153.1 65
66 **Collaboratory.IAM**
67
hbpadmin 157.1 68 * Verification emails are now sent out 15 days before your account needs re-verification. This means you can verify your account before it expires, preventing any potential interruption to access.
chaney08 153.1 69
70 === **Collaboratory 2 release (2022-10-24) (Released)** ===
71
hbpadmin 149.1 72 (% class="wikigeneratedid" %)
73 **Collaboratory.Lab **
74
75 * Deploying a new "Official EBRAINS release candidate" build of EBRAINS tools to the Lab.
76 ** Contains the latest version of participating tools.
chaney08 150.1 77 ** Will become the new Official EBRAINS release if no issues are reported.
hbpadmin 149.1 78
79 **Collaboratory.Wiki**
80
chaney08 152.1 81 * Issues with resetting password while 2-factor authentication(2fa) was active or deactivating 2fa from your account have been resolved.
hbpadmin 149.1 82
chaney08 148.1 83 === **Collaboratory 2 release (2022-10-04)  (Released)** ===
hbpadmin 144.1 84
hbpadmin 146.1 85 **Collaboratory.Wiki**
86
87 * Improved search functionality
88 ** Collab descriptions are now also included in collab search, previously just title was used in the search
89 ** Search results are now far more accurate and relevant to the search terms
90 ** Users with large numbers of collabs no longer encounter unexpected search results
91 ** Collabs with special characters are now appropriately findable in the collab search
92
hbpadmin 144.1 93 **Collaboratory.Lab**
94
hbpadmin 146.1 95 * Fix for ipycanvas extension in latest image.
96
97 === **Collaboratory 2 release (2022-09-14)  (Released)** ===
98
99 **Collaboratory.Lab**
100
hbpadmin 144.1 101 * Added Admin interface which allows greater ability to support users with their notebooks.
102 * Pre-fill git committer info with user info from IAM.
103
hbpadmin 142.1 104 === **Collaboratory 2 release (2022-08-15) (Released)** ===
hbpadmin 140.1 105
106 **Collaboratory.Wiki**
107
hbpadmin 144.1 108 * OIDC App client creation fix now allows M2M flow.
hbpadmin 141.1 109 * New API released to list OIDC clients you own. New API endpoint will be viewable [[here >>doc:Collabs.the-collaboratory.Documentation Wiki.API.WebHome]]after deployment.
hbpadmin 140.1 110 * Misc. fixes.
111
chaney08 139.1 112 === **Collaboratory 2 release (2022-06-28) (Released)** ===
hbpadmin 136.1 113
hbpadmin 138.1 114 **Collaboratory.IAM**
115
116 * First name and Last name are no longer editable via the identity manager
117
118 === **Collaboratory 2 release (2022-06-14) (Released)** ===
119
hbpadmin 136.1 120 **Collaboratory.Lab**
121
122 * Integrated tvb-widgets ([[https:~~/~~/github.com/the-virtual-brain/tvb-widgets>>url:https://github.com/the-virtual-brain/tvb-widgets]])
123 * Fixed issue where kernel lost connection to the running notebook session
chaney08 137.1 124 * Improved drive integration in the lab: Reduced “Cannot open” errors by initialising the relevant shared collab before the user session launches
hbpadmin 136.1 125
hbpadmin 135.1 126 === **Collaboratory 2 release (2022-06-09) (Released)** ===
hbpadmin 124.1 127
hbpadmin 131.1 128 **Collaboratory.Wiki**
129
130 * Fixed issue with collab search, results now return public collabs appropriately.
hbpadmin 132.1 131 * Extended API of the OIDC client managers app. [[Read more.>>https://wiki.ebrains.eu/bin/view/Collabs/the-collaboratory/Documentation%20IAM/FAQ/OIDC%20Clients%20explained/1.%20Registering%20an%20OIDC%20client%20v2/]]
hbpadmin 131.1 132 * Guest accounts: deploying script to deactivate guest accounts that have reached end of life.
133
134 **Collaboratory.Drive**
135
136 * Changes made to allow admins to monitor large file usage in the Drive.
137
138 === **Collaboratory 2 release (2022-05-12) (Released)** ===
139
hbpadmin 126.1 140 **Collaboratory.Lab**
141
hbpadmin 130.1 142 * Deploying an "Experimental" build of EBRAINS tools to the Lab.
143 ** Contains the latest version of participating tools.
144 ** Updated much more frequently than the official EBRAINS releases of participating tools.
145 ** Contrary to EBRAINS releases, experimental build only persists until the next deployment of the experimental build.
146 ** Please note that this is an experimental build, and as such, users should use it at their own risk. EBRAINS recommends the official releases instead.
hbpadmin 126.1 147
148 === **Collaboratory 2 release (2022-05-11) (Released)** ===
149
hbpadmin 124.1 150 **Collaboratory.Wiki**
151
hbpadmin 125.1 152 * Fixing an issue discovered with users profile view.
153
154 === **Collaboratory 2 release (2022-05-10) (Released)** ===
155
156 **Collaboratory.Wiki**
157
hbpadmin 124.1 158 * Guest account frontend released. To gain access please request sponsor role with justification via [[https:~~/~~/ebrains.eu/support>>https://ebrains.eu/support]]
159
hbpadmin 123.1 160 === **Collaboratory 2 release (2022-04-26) (Released)** ===
hbpadmin 117.1 161
hbpadmin 118.1 162 **Collaboratory.Wiki**
hbpadmin 117.1 163
hbpadmin 122.1 164 * Update to guest account creation API.
165
166 === **Collaboratory 2 release (2022-04-12) (Released)** ===
167
168 **Collaboratory.Wiki**
169
hbpadmin 121.1 170 * Initial guest account creation API released.
171
172 **Collaboratory.IAM**
173
174 * Initial version of updated OIDC client API released.
175
176 === **Collaboratory 2 release (2022-04-07) (Released)** ===
177
178 **Collaboratory.Wiki**
179
hbpadmin 117.1 180 * Fixup on Units navigation UI
hbpadmin 119.1 181 * New Collaboratory policies about public collabs, [[more info>>https://wiki.ebrains.eu/bin/view/Collabs/the-collaboratory/New%20Collaboratory.wiki%20policy/]]
hbpadmin 117.1 182
chaney08 116.1 183 === **Collaboratory 2 release (2022-04-04)(Released)** ===
hbpadmin 112.1 184
mmorgan 114.1 185 The EBRAINS logo is being updated throughout all of our services.
hbpadmin 112.1 186
chaney08 116.1 187 **Collaboratory.IAM**
188
189 * Keycloak has been upgraded to version 15
190
chaney08 115.1 191 Note: Developers using Spring boot 2.4.0 may encounter issues contacting our services, to avoid any issues please upgrade to Spring boot 2.6.4
192
chaney08 111.1 193 === **Collaboratory 2 release (2022-03-22) (Released)** ===
deuerlei 104.1 194
195 **Collaboratory.Lab**
196
197 * Improved environment variables (more details in [[FAQ>>https://wiki.ebrains.eu/bin/view/Collabs/the-collaboratory/Documentation%20Lab/FAQ/Creating%20and%20accessing%20environment%20variables%20/]]):
mmorgan 108.1 198 ** Added variables for the Docker image version
199 ** Support for environment variables has been added for URLs specifying an execution site (e.g. lab.ch.ebrains.eu/...). Up to now, environment variables were only supported fo URLs to the generic lab.ebrains.eu/...
200 * Added a new extension in the Lab to monitor HPC jobs launched through the Unicore interface. More info [[here>>https://github.com/the-virtual-brain/tvb-ext-unicore]].
201 ** To activate the extension in the JupyterLab context menu: View -> Activate Command Palette -> PyUnicore Task Stream
202 * Added support for the [[SWIG>>http://www.swig.org/]] tool. SWIG allows C/C++ libraries to be accessed in Python.
deuerlei 104.1 203
hbpadmin 105.1 204 **Collaboratory.Wiki**
205
mmorgan 108.1 206 * Updated footer.
hbpadmin 105.1 207
mmorgan 108.1 208 **Collaboratory.Office**
hbpadmin 105.1 209
mmorgan 145.1 210 * Added a plugin that will open the collab a document is contained in. [[Read more>>doc:Collabs.the-collaboratory.Documentation Office.FAQ.Accessing a document's collab.WebHome]].
hbpadmin 105.1 211
chaney08 111.1 212 **Collaboratory.Drive **
hbpadmin 105.1 213
chaney08 107.1 214 * Added a button that will open the collab a document is contained in. [[Read more>>doc:Collabs.the-collaboratory.Documentation Drive.FAQ.Accessing a parent collab from inside the Drive.WebHome]].
hbpadmin 105.1 215
hbpadmin 109.1 216 **OpenShift Dev cluster**
217
218 * The NFS disk storage for all persistent volumes is being increased.
219
chaney08 103.1 220 === **Collaboratory 2 release (2022-02-22) (Released)** ===
hbpadmin 98.1 221
hbpadmin 101.1 222 **Collaboratory.Lab**
223
mmorgan 102.1 224 * A new R kernel has been implemented in the Lab. Users can now select this kernel to use the R language in notebooks.
225 * The ebrains-drive lib is now available by default in new notebooks. The "pip install" command is no longer needed for Collaboratory.Drive integration.
hbpadmin 101.1 226
227 === **Collaboratory 2 release (2022-02-16) (Released)** ===
228
hbpadmin 100.1 229 **Collaboratory.IAM**
hbpadmin 98.1 230
mmorgan 99.1 231 * When EBRAINS users log in the first time, they have occasionally seen an error message. This is resolved by this deployment.
hbpadmin 98.1 232
mmorgan 99.1 233 **Collaboratory.Lab**
hbpadmin 98.1 234
mmorgan 99.1 235 * We have fixed an issue with SSL certificates while using certain Python modules (e.g. requests) in the Lab.
hbpadmin 98.1 236
hbpadmin 97.1 237 === **Collaboratory 2 release (2022-02-08) (Released)** ===
chaney08 89.1 238
239 **Collaboratory.Wiki**
240
chaney08 95.1 241 * All common navigation elements in a collab (Drive, Team, Lab, Bucket) are now grouped together at the top of the left navigation panel.
chaney08 89.1 242
243 **Collaboratory.Lab**
244
chaney08 95.1 245 * Updated JupyterLab image to use latest version
chaney08 89.1 246 ** Adds a debugger to the Lab, allowing users to debug their notebooks.
247 ** Includes native git integration
hbpadmin 94.1 248 ** Allows the user to install extensions to JupyterLab
chaney08 89.1 249 * Fixed issues with notebook exports (and re-enabled native PDF export)
hbpadmin 92.1 250 * Added [[nbgitpuller>>https://jupyterhub.github.io/nbgitpuller/]] support
chaney08 89.1 251 * Set bash as the default shell in the terminal
chaney08 95.1 252 * Updated the JupyterLab extension to make [[Lab URL query parameters>>doc:Collabs.the-collaboratory.Documentation Lab.FAQ.Creating and accessing environment variables .WebHome]] available (now works with direct links to a specific openshift cluster)
253 * Reduced Docker image size to improve Collaboratory Lab load times.
254 * Fixed unknown user id issue in the Lab container
255 * Updated Jupyter Hub version
chaney08 89.1 256
chaney08 88.1 257 === **Collaboratory 2 release (2022-01-25) (Delayed, Released 27th)** ===
hbpadmin 84.1 258
259 **Collaboratory.Wiki**
260
hbpadmin 85.1 261 * Adding a new API to delete collabs. Details found [[here>>doc:Collabs.the-collaboratory.Documentation Wiki.API.WebHome]] after release.
hbpadmin 84.1 262 * The "Get Collab" API has been updated, you can now use this API to search for exact title. Details found [[here>>doc:Collabs.the-collaboratory.Documentation Wiki.API.WebHome]] after release.
263 * Updates to the maintenance banner.
264
chaney08 83.1 265 === **Collaboratory 2 release (2022-01-17) (Released)** ===
chaney08 80.1 266
hbpadmin 82.1 267 **Collaboratory.Lab**
268
269 * We are re-enabling the Juelich site selection for running your Notebooks on.
270
271 === **Collaboratory 2 release (2022-01-11) (Released)** ===
272
chaney08 80.1 273 **Collaboratory.Wiki**
274
hbpadmin 81.1 275 * The new Toast that appears if you have not filled in your PLUS profile has been updated to take into account more scenarios. The message and links will change dynamically based on a users situation.
chaney08 80.1 276 * Upgrading XWiki to latest patch version.
277 * New policy released regarding collabs. [[Read more>>doc:Collabs.the-collaboratory.New Collaboratory\.wiki policy.WebHome]]
278
279 **Collaboratory.Drive**
280
281 * File uploads are now limited to 1GB or below in size.
282
chaney08 79.1 283 === **Collaboratory 2 release (2021-12-14) (Released)** ===
chaney08 70.1 284
285 **Collaboratory.Lab**
286
287 * Idle Labs are now kept running for up to 12 hours before being automatically closed.
chaney08 72.1 288 * The Lab is aware of a new permission regarding user quotas. Lab users will be asked to grant the Lab this permission in their next session.
chaney08 77.1 289 * The "Experimental" image is now becoming the Official EBRAINS image while the current  "Official EBRAINS" image will now be deprecated.
290 * The option to choose the Julich site is temporarily being disabled.
chaney08 70.1 291
292 **Collaboratory.Wiki**
293
mmorgan 71.1 294 * Removed inactive EBRAINS user accounts from the results of user searches. These include the list displayed when trying to add a user to a collab's Team.
295 * The wording of the email received when you need to re-verify your account has been updated.
chaney08 70.1 296 * You can no longer create collabs with duplicate titles.
mmorgan 71.1 297 * When using the "Collabs" search, filters will no longer be applied by default; instead you now need to select what filters you want to apply.
chaney08 75.1 298 * A "Toast" popup will now remind you to fill out your PLUS profile if you have not already done so.
chaney08 70.1 299
chaney08 77.1 300 **Collaboratory.Bucket (Data-proxy)**
301
302 * file picker option added in the data-proxy. Data Proxy front UI can be parametrized with 2 query parameters: redirect_uri  and redirect_title . Once the user has selected files/folders in the UI, and clicks on the redirect button, he is redirected to the specified redirect_uri. The redirect_title is optional and allows to customize the redirect button in the UI.
303 * There is a new query parameter folder . When the user browses a bucket, the folder parameter is updated. That allows the user to share a link to a specific folder.
304 * Public buckets are now visible to anyone authenticated in the UI
305 * Public / Private toggle is visible to everyone but disabled by default. Only administrators can update the bucket privacy status.
306
chaney08 78.1 307 === **Collaboratory 2 release (2021-12-07) (Released)** ===
hbpadmin 43.1 308
chaney08 63.1 309 **Collaboratory.Lab**
310
chaney08 69.1 311 * The Lab now loads the Drive of the selected collab before loading the Drive of other collabs the user has access to. This reduces the time it takes for the selected collab's Drive to be accessible when starting up the Lab. This applies both to users opening the Lab from the Wiki navigation or from a link to a specific notebook.
312 * Notebooks can be exported to various views from the File > Export Notebook as menu. Some of those export options were no longer working and have been removed.
chaney08 63.1 313
314 **Collaboratory.Wiki**
315
chaney08 69.1 316 * The guided tour of the Wiki for users logging in the first time has been removed. Instead, feel free to check out individual tool tutorials that you can find on our [[documentation page.>>doc:Collabs.the-collaboratory.WebHome]]
chaney08 63.1 317
318 === **Collaboratory 2 release (2021-11-10) (Released)** ===
319
mmorgan 53.1 320 **Collaboratory.Drive**
321
322 * We are deploying an upgrade to the Drive which should resolve multiple issues and adds new features including:
hbpadmin 59.1 323 ** It improves Drive performance which had caused issues with Lab sessions left idling by users.
324 ** Its web interface updates dynamically when new files are created/deleted/renamed in a sub-folder of a collab's Drive.
mmorgan 62.1 325 ** It adds a new search file by filename in a given collab's Drive.
mmorgan 58.1 326 ** It adds a new "column view" in the web UI for browsing files in a collab's Drive.
327 ** Its web UI groups the public (shared) links and smart (internal) links to be managed via a common button and pop-up.
328 ** Its web UI adds color tagging to individual files.
mmorgan 53.1 329
mmorgan 54.1 330 (% class="wikigeneratedid" %)
331 **Collaboratory.Lab**
332
333 * The new version provides access to Lab sessions with more RAM for authorized users. Authorization can be requested by contacting [[https:~~/~~/ebrains.eu/support>>https://ebrains.eu/support]] with a motivation.
334
mmorgan 53.1 335 === **Collaboratory 2 release (2021-10-19) (Released)** ===
336
mmorgan 50.1 337 **Collaboratory.Lab**
338
hbpadmin 52.1 339 * We have now added the ability for users to request larger amounts of memory for notebooks. For now, the best way to gain access to these larger notebooks is to [[contact support>>https://ebrains.eu/support/]] to request access.
hbpadmin 51.1 340
341 **Collaboratory.Bucket**
342
343 * Users now have the ability to copy files from one bucket to another. You can do this when initially creating a bucket or at any time after creation via the Bucket UI.
344
345 === **Collaboratory 2 release (2021-10-11) (Released)** ===
346
347 **Collaboratory.Lab**
348
mmorgan 50.1 349 * We are adding a new Python kernel to the Collaboratory Lab in which pre-installed neuroscience tools are readily available. The new kernel is the one with "//**EBRAINS**//" in its name. Available tools in that kernel can be listed with the command "//**module avail**//". The new kernel will be available in the experimental Docker image of the Lab.
350
351 === **Collaboratory 2 release (2021-09-14) (Released)** ===
352
hbpadmin 47.1 353 **Collaboratory.Wiki**
354
hbpadmin 48.1 355 * Collabs will now have a "Contact Administrator" button that allows users to send a message to the administrators of a collab. The administrators will receive the message along with the details of the user that has sent the message.
356
mmorgan 50.1 357 === **Collaboratory 2 release (2021-09-03) (Released)** ===
hbpadmin 48.1 358
359 **Collaboratory.Wiki**
360
hbpadmin 47.1 361 * A new API is available to retrieve users emails based off a username, this is only available to users with the appropriate rights and will be detailed in the [[Wiki API>>doc:Collabs.the-collaboratory.Documentation Wiki.API.WebHome]] .
362 * The User API will now also return the "mitreid-sub", a unique identifier carried over from Collaboratory 1 that will be maintained in Collaboratory 2.
363 * The GET Users endpoint is now only available for authenticated users.
364
mmorgan 50.1 365 === **Collaboratory 2 release (2021-08-31) (Released)** ===
hbpadmin 47.1 366
hbpadmin 43.1 367 **Collaboratory 1**
368
369 * Account creation has been removed from Collaboratory 1 in preparation for Collaboratory 1 shutdown.
370
371 **Collaboratory.IAM**
372
hbpadmin 46.1 373 * Users registering on Collaboratory 2 will now have a 16 digit numerical "Mitreid-sub" generated. This allows services using the "mitreid-sub" on Collaboratory 1 to continue using this field on Collaboratory 2.
hbpadmin 43.1 374
375 **Collaboratory.Wiki**
376
hbpadmin 45.1 377 * The collab creation form has been updated. When users click on "Create" they will now see a popup window informing them of the progress of the collab creation.
hbpadmin 43.1 378
mmorgan 50.1 379 === **Collaboratory 2 release (2021-08-17) (Released)** ===
hbpadmin 35.1 380
mmorgan 38.1 381 **Collaboratory.IAM**
hbpadmin 35.1 382
mmorgan 38.1 383 * Users can check in the Wiki for their [[past login events>>https://iam.ebrains.eu/auth/realms/hbp/account/log]] (or from the wiki > user profile icon > basic profile > logs). The IAM update will pass the correct IP address from which the user logged in, instead of displaying the IP address 127.0.0.1.
hbpadmin 35.1 384
385 **Collaboratory.Lab**
386
mmorgan 38.1 387 * Added a form for the user to select the Fenix site to run notebooks on.
388 * Activated the Fenix Jülich Supercomputing Centre execution site.
389 * Users visiting the Lab before visiting the Drive will now receive an appropriate error message.
390 * New environment variables have been added in the Notebook environment with:
391 ** the notebook filename,
392 ** the name of the collab containing the notebook file in its Drive,
393 ** the Fenix site where the notebook is executed, and
394 ** the Docker image in which the notebook is executed.
chaney08 42.1 395 * View our [[sample notebook>>https://lab.ebrains.eu/user-redirect/lab/tree/shared/The%20Collaboratory/lab_env.ipynb?LAB_TEST=1]] on how to access these variables. NOTE: This notebook will not work until after tonight's deployment.
mmorgan 41.1 396 * Read the [[FAQ>>doc:Collabs.the-collaboratory.Documentation Lab.FAQ.Creating and accessing environment variables .WebHome]] for creating your own custom environment variables.
hbpadmin 35.1 397
mmorgan 50.1 398 === **Collaboratory 2 release (2021-08-03) (Released)** ===
mmorgan 34.1 399
400 **Collaboratory.Wiki**
401
402 * Change 2 endpoints of the Collaboratory [[Wiki API>>doc:Collabs.the-collaboratory.Documentation Wiki.API.WebHome]] to also accept a Keycloak sub unique identifier as a search parameter.
403
mmorgan 50.1 404 === **Collaboratory 2 release (2021-07-20) (Released)** ===
hbpadmin 22.1 405
hbpadmin 33.1 406 **Collaboratory.Wiki**
407
hbpadmin 37.1 408 * Collaboratory deletion now removes the associated Drive from the name, preventing duplicate Drives.
409 * Copying links from the Identity manager now works correctly.
hbpadmin 33.1 410 * Backend changes made in preparation for future releases.
411 * Complete redesign of the Documentation which you will find in [[The Collaboratory>>doc:Collabs.the-collaboratory.WebHome]] collab.
412
413 === **Collaboratory 2 release (2021-07-06) (Released)** ===
414
chaney08 25.1 415 **Collaboratory.Lab**
416
chaney08 28.1 417 * Fixes and improvements to pyplot and matplotlib.
418 * Added NGL Viewer to interactively view molecular structures.
chaney08 31.1 419 * Fixed permission issues in the notebook docker images that was were causing some libraries to throw warnings, the .cache dir is now writeable.
chaney08 30.1 420 * Images have been cleaned by removing unnecessary libraries.
chaney08 28.1 421
422 **Collaboratory.IAM**
423
424 * Fixed an issue where a user would occasionally be unable to delete a newly created collab.
425
chaney08 29.1 426 **Collaboratory.Drive**
427
chaney08 28.1 428 * Fixed an issue where linking directly to a document in a newly created private collab would provide an "Unable to view file" error.
429
430 === **Collaboratory 2 release (2021-06-22) (Released)** ===
431
432 **Collaboratory.Lab**
433
434 * Official EBRAINS Docker image~: Added R and rpy2.
chaney08 27.1 435 * Experimental Docker image for EBRAINS tool developers: NFS Mount will now be available for developers. Added gcc10 and image optimisations.
chaney08 25.1 436
437 === **Collaboratory 2 release (2021-06-14) (Released)** ===
438
hbpadmin 22.1 439 **Collaboratory.Wiki **
440
hbpadmin 23.1 441 * Fixed an issue causing new collabs to not have a Drive present.
hbpadmin 22.1 442
hbpadmin 23.1 443 === **Collaboratory 2 release (2021-06-10) (Released)** ===
chaney08 21.1 444
445 **Collaboratory.Wiki **
446
447 * A small bug fix for the collab search page.
448
chaney08 18.1 449 === **Collaboratory 2 release (2021-06-08) (Released)** ===
chaney08 11.1 450
chaney08 17.1 451 **As well as individual services, we have also changed how announcements are made, if more than one announcement is being made you now see an arrow to the left of the announcement banner that you can use to switch between announcements.**
chaney08 12.1 452
chaney08 19.1 453 **Collaboratory.Wiki **
chaney08 11.1 454
455 * Added more filters to Collab search, you can now filter on collabs where you are a viewer, an editor or an admin.
456 * Collab Creation and collab settings forms have been updated, more descriptions have been added and the private or public collab choice is now a radio button.
457 * Instructions on how to get your collab as a highlighted collab have been published, if you visit the collab search page you will find a link to this new page just above the highlighted collabs.
chaney08 12.1 458 * The collab page editor has been replaced by a full page editor instead of the current inline editor being used.
chaney08 11.1 459
460 **Collaboratory.Lab**
461
462 * Users can now choose between 2 different images when launching a notebook, most users should keep using the Official EBRAINS image, however tool developers can now work on the experimental image.
463
464 **Collaboratory.Bucket**
465
466 * The ability for users to create permanent links is now available via the UI by right clicking on any file and choosing "Manage public link".
467
chaney08 10.1 468 === **Collaboratory 2 release (2021-05-11) (Released)** ===
chaney08 4.1 469
chaney08 8.1 470 **The Collaboratory release on 11th May represents a large change in the functionality of the collab search page. Please [[contact support>>https://ebrains.eu/support/]] if you encounter any issues with this new functionality, thank you.**
chaney08 6.1 471
chaney08 4.1 472 **Collaboratory.Wiki**
473
chaney08 8.1 474 * Large update to the collab search page functionality
chaney08 4.1 475 ** Look and feel has been improved
476 ** You will now see "Highlighted collabs" when initially arriving on the page
477 ** You can now filter by "My favourite" collabs - Showing only those collabs that you have favourited (Small heart symbol on top right of a collab page)
478
479 **Collaboratory.Lab**
480
chaney08 8.1 481 * Neuron installation has been fixed and updated to latest version.
482 * The "Copy shareable link" menu entry in the file browser of the Lab should now produce a correct URL without manual intervention.
chaney08 9.1 483 * You can now use Environment variables populated from a URL, [[more information>>https://wiki.ebrains.eu/bin/view/Collabs/the-collaboratory/how-to/Adding%20environment%20variables%20to%20Jupyter%20Notebooks/]]
chaney08 4.1 484
chaney08 7.1 485 **Collaboratory.Bucket**
486
chaney08 8.1 487 * The ability for users to create permanent links is now available  (Via API only for now): [[API Documentation>>https://data-proxy.ebrains.eu/api/docs#/permalinks]]
chaney08 7.1 488
chaney08 3.1 489 === **Collaboratory 2 release (2021-04-28) (Partially released)** ===
chaney08 1.1 490
491 **Due to the problem described in the "Drive issue" announcement, the Collaboratory release was delayed from 27th April to the 28th April**
492
493 **Collaboratory.Wiki**
494
495 * The new "Bucket" menu is now available in all collabs
496 * Various UI fixes.
497 * Collapsible macro styles have been updated.
498 * Fixed some issues with our Search functionality.
499 * Favourite collabs API has been developed for future integration into the UI.
500 * Added a report button to collabs, you can now report unused or inappropriate collabs.
501 * Issue for some users getting permission denied messages when they should not has been resolved.
502
503 **There was an issue during the release of the Lab, as such, the following has not yet been released and will be released on a different day.**
504
505 **Collaboratory.Lab**
506
507 * Nueron installation has been fixed and updated to latest version.
508 * The "Copy shareable link" button should now work without manual intervention.
509
chaney08 3.1 510 === **Collaboratory 2 release (2021-04-13) (Released)** ===
chaney08 1.1 511
512 **Collaboratory.Wiki**
513
514 * The new "Bucket" menu will be available in every new collab created, and will be rolled out to existing collab's in the coming days.
515 * Users logged into the wiki, should now automatically be logged into the lab in an iFrame instead of needing to login again.
516
chaney08 3.1 517 === **Collaboratory 2 release (2021-03-30) (Released)** ===
chaney08 1.1 518
519 The release going ahead on the 30th March will contain numerous upgrades and fixes throughout the Collaboratory Drive, Wiki and Lab.
520
521 **Collaboratory.Drive**
522
523 * Incorrect name formats are now automatically fixed
524 * Improvements to Automated tests.
525
526 **Collaboratory.Lab**
527
528 * Current Notebook image was rebuilt with extra extensions.  These are :  nbgitpuller,ipywidgets, jupyterlab-plotly, jupyter-matplotlib
529
530 **Collaboratory.Wiki**
531
532 * The "Favourite" button was moved to the top right of a collab page.
533 * New API added, this will allow users to get the Collab(CollabObject) via the DriveId - [[More information>>url:https://wiki.ebrains.eu/bin/view/Collabs/the-collaboratory/Technical%20documentation/For%20Developers/Collaboratory%20API/]]
534 * Highlighted Collabs is now a responsive design.
535 * Improvements to Automated tests.
536
537 Note: This release will cause all running containers to be reset.
538
chaney08 3.1 539 === Wiki update (2021-03-02) **(Released)** ===
chaney08 1.1 540
541 As well as numerous bug fixes and small improvements to the Wiki, we are also upgrading the current version of XWiki(Version 10.11.9) to the most recent version of XWiki (Version 12.10.2). We are also adding a few fixes to its integration in the Wiki front end . A new feature was added: a new "Like" (Represented by a [[image:https://a.slack-edge.com/production-standard-emoji-assets/13.0/google-medium/2764-fe0f.png||alt=":heart:"]]) feature that is now available on Collab pages. For now, it can be used to show support and approval for any Collab page you like and use, in the future, we will be expanding upon this functionality. 
542
543 If you would like to see new features or feel certain functionality is required to improve the Collaboratory, please [[join the Collaboratory user group>>url:https://wiki.ebrains.eu/bin/view/Collabs/collaboratory-user-group/Joining%20the%20group/]], once joined, please do not hesitate to [[make your suggestions>>url:https://drive.ebrains.eu/lib/aac38e36-4bd9-48ee-9ae6-b876a65028aa/file/Collaboratory%20User%20Group%20-%20Suggestion%20box.docx]].
544
chaney08 3.1 545 === EBRAINS ticketing system (2021-03-02) **(Released)** ===
chaney08 1.1 546
547 The categories of tickets are being aligned to the description of [[services on the EBRAINS.eu website>>url:https://ebrains.eu/services/]]. We are using this opportunity to also upgrade the ticketing system to a more recent version.
548
chaney08 3.1 549 === Collaboratory 2 release (2021-02-17) **(Released)** ===
chaney08 1.1 550
551 The release going ahead on 17th February has the following enhancements.
552
553
554 1. Mounting a new "Shared" drive for the ability to easily share links from Seafile. So going forward, any links that need to be shared should be generated in the "Shared " drive. The original "/drive" will be kept so it does not break any of the already existing links.
555 1. OnlyOffice is being upgraded to the latest version. This should solve the issue listed below in the "Files locked in the Drive " section. The section will remain temporarily until it is verified this issue is fully fixed.
556 1. Seafile file system is being increased
557
chaney08 3.1 558 === Collaboratory 1 maintenance **(Released)** ===
chaney08 1.1 559
560 Collaboratory 1 services will be down from 18:00 CET [[(my timezone)>>url:https://everytimezone.com/s/4a9daa55]] Thursday Jan 7 for maintenance. The services are being re-hosted from the EPFL/BBP infrastructure to the Fenix infrastructure. The OIDC authentication service will be reactivated first (within 30 minutes); all other services will follow in the evening. Once the Collaboratory 1 services are back online, you may find that files added to the storage within the last days do not initially appear. This will be remedied overnight as we synchronize the storage. Thank you for your patience and understanding.
561
562 As a reminder the Collaboratory 1 services are deprecated and will be shut down in September 2021.
563
564 If you encounter issues with Collaboratory 1 after Friday 12:00 CET, please contact [[https:~~/~~/ebrains.eu/support>>url:https://ebrains.eu/support]]
565
566 The re-hosting was completed on Thursday evening. Some services relying on the Collaboratory 1 may need to be restarted to take into account the new DNS entries. Please notify [[support>>url:https://ebrains.eu/support]] of any issues you identify.