Wiki source code of Releases

Version 227.1 by hbpadmin on 2023/10/13 11:37
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1 === **Collaboratory release (2023-10-12)(Partially released)** ===
2
3 **Collaboratory.Drive**
4
5 * We are upgrading the version of the operating system of the server running the Drive service. **(Released)**
6 * We are deploying a fix to warn users renaming files/folders in the Drive of a risk of data loss if an Office file is open in editing mode. **(Delated release)**
7
8 The upgrade of the OS was not successful during the maintenance window scheduled. Our team resolved the issue and completed the upgrade, but we have delayed the fix mentioned above.
9
10 === **Collaboratory release (2023-09-08)(Partially released)** ===
11
12 **Collaboratory.IAM (Delayed release)**
13
14 * We are upgrading the software that IAM relies on to the latest version.
15
16 **Collaboratory.Wiki**
17
18 * Performance when adding members to a team has been improved.
19 * Performance when checking user info has been improved.
20 * UX has been improved when adding a user/group/unit to a team.
21
22 === **Collaboratory release (2023-08-22)(Released)** ===
23
24 **Collaboratory.Wiki**
25
26 * A new filter when searching groups is now available. This filter will only show groups that you are already a member of.
27 * Improved loading of the Identity manager page.
28 * Fixes to OIDC clients not having openid scope by default on creation.
29 * Improved tooltips on collab creation.
30
31 === **Collaboratory release (2023-08-02)(Released)** ===
32
33 **Collaboratory.Wiki**
34
35 * Improved search functionality
36 ** Search results are now more accurate and relevant.
37 ** Implemented various search operators. [[Read more>>doc:Collabs.the-collaboratory.Documentation Wiki.FAQ.Search operators.WebHome]].
38 ** Improved results for collabs containing special characters.
39
40 === **Collaboratory release (2023-07-24)(Released)** ===
41
42 **Collaboratory.IAM**
43
44 We are upgrading the software that IAM relies on, this upgrade will bring some changes that you should be aware of:
45
46 * "Log-out" from a service: After clicking "Log-out," you will be directed to a new screen which will ask you to log out of your EBRAINS session.
47 * For service developers, the public key of the HBP realm has changed. If your application is currently using this value, please update it with the value found [[here>>https://iam.ebrains.eu/auth/realms/hbp/]].
48
49 Should you encounter any issues after the upgrade, please contact us at [[https:~~/~~/ebrains.eu/support>>https://ebrains.eu/support]].
50
51 === **Collaboratory release (2023-06-27) (Released)** ===
52
53 (% class="wikigeneratedid" %)
54 **Collaboratory.IAM**
55
56 * Introduce a new form for users from institutions which have not yet been validated
57 * Prepare the management of updates to EBRAINS Terms
58
59 **Collaboratory.Wiki**
60
61 * Introduce a new unified search UI to search for collabs and wiki pages
62 * Introduce a new option to make Groups private
63 * Introduce a new option to create invitation links to invite a user to a collab's team
64 * Avoid the display of the toast message for guest users
65 * Implementing performance optimisations
66
67 **Collaboratory.Lab**
68
69 * Update the Docker image used in the Lab by removing excess packages, adding libraries, and improving Git integration (prefilling the username and email)
70
71 (% style="color:#3498db" %)Check this page for confirmation that the release has been completed.
72
73 === **Collaboratory release (2023-05-02) (Released)** ===
74
75 **Collaboratory.IAM**
76
77 * The registration form is updated to collect additional information for new users: consent to Terms in the registration form (not in a separate page, consent to receive emails, country of residence).
78
79 Users might notice a very short downtime of the IAM service (~~1 minute) as this release is deployed.
80
81 === **Collaboratory release (2023-03-09) (Released)** ===
82
83 **Collaboratory.Wiki**
84
85 * Collab guest accounts can now be created again.
86
87 === **Collaboratory release (2023-02-21) (Released)** ===
88
89 **Collaboratory.Wiki**
90
91 * Collab names are now unique. Once a collab name has been used, even if the collab is deleted, that name will no longer be usable.
92 * Unit admins will now receive weekly reminders if a user join request is awaiting a response.
93
94 **Collaboratory.Bucket**
95
96 * Performance optimizations on both the back-end and the front-end
97 * Simplification of the API (e.g. deprecation of "public" endpoints) - [[API endpoints>>doc:Collabs.the-collaboratory.Documentation Bucket.API]]
98 * Better support for clients issuing many requests (such as image viewer apps)
99 * Several bug fixes (such as issues with buckets containing more than 10'000 objects)
100
101 **Collaboratory.Lab**
102
103 * An issue when launching the Lab for usernames containing special characters has been resolved.
104 * The tvb-ext-xircuits extension has been included in the Lab
105 ** This offers a graphical way to build a showcase within EBRAINS Lab.
106 * Updated tvb-ext-unicore to support downloading folders from HPC and correctly update the status of jobs in all cases
107 * Updated tvb-widgets version to include latest improvements and bug fixes
108
109 === **Collaboratory release (2023-02-09) (Released)** ===
110
111 **Collaboratory.Wiki**
112
113 * The Drive service now supports URLs pointing to a sub-folder and the URL of the page is updated when navigating in the Drive.
114 ** URL format as follows: https:~/~/wiki.ebrains.eu/bin/view/Collabs///<collabname>///Drive#//<folder>/<subfolder>//
115 ** Note that such links only work for users that are already logged in.
116
117 === **Collaboratory release (2023-02-07) (Released)** ===
118
119 **Collaboratory.Lab**
120
121 * Users will no longer have to visit the Drive before using the Lab on their first visit to the Lab.
122
123 **Collaboratory.Wiki**
124
125 * An issue with some users receiving multiple emails on account registration has been resolved.
126
127 **Collaboratory.IAM**
128
129 * Users were occasionally getting warnings they could not access a particular client with no information on the client they could not access. This has been resolved.
130
131 === **Collaboratory Wiki update (2023-01-27) (Released)** ===
132
133 **Collaboratory.Wiki**
134
135 * The Wiki service will be updated. Recent changes to the service have disabled the listing of OIDC service accounts which are granted access to collabs. This update is fixing this issue.
136
137 === **Collaboratory release (2023-01-24) (Released)** ===
138
139 **Collaboratory.Wiki**
140
141 * The collab deletion process has been updated. 
142 ** Users are now asked to type in the name of the collab they are deleting to ensure they mean to delete the entire collab.
143 ** Users are now informed when a collab is deleted.
144 * More collab context is being added to the Lab if you access the Lab via a collab iframe. These will appear alongside other [[environment variables>>doc:Collabs.the-collaboratory.Documentation Lab.FAQ.Creating and accessing environment variables .WebHome]]. (This part of the release was delayed)
145 * On smaller screens, the login button and the kebab menu now appear at the top of the page as on larger screens.
146
147 **Collaboratory.IAM**
148
149 * Verification emails are already sent out 2 weeks before a user has to revalidate their email address. The content of that email is being updated.
150
151 === **Collaboratory 2 release (2022-12-30) (Released)** ===
152
153 We are deactivating the search feature in the Wiki service for users that are not authenticated for security reasons. No downtime is expected.
154
155 === **Collaboratory 2 release (2022-12-20) (Released)** ===
156
157 We are deploying a fix to the Wiki service to reduce the amount of information the Collaboratory Wiki stores and displays about EBRAINS users.
158
159 * Wiki content edited by a user will appear as edited by that user's first name and first initial of last name. EBRAINS users that are logged in can click on the name to view the user's profile with full name.
160 * The user's email address is removed from the user's profile in the Wiki service. It remains visible in PLUS for users that have created/validated their PLUS profile.
161
162 After the first few minutes, the Wiki service will likely be accessible as we remove metadata from the service, but we may need to bring down the service if we encounter issues. Avoid editing content during the maintenance until the end of maintenance is notified in a banner or here.
163
164 We've extended the estimated maintenance time to 45 minutes as the backup procedure took longer than expected.
165
166 The maintenance is finished.
167
168 === **Collaboratory 2 release (2022-12-13) (Released)** ===
169
170 This release contains fixes for minor issues discovered in the OIDC client manager app and Lab environment variables.
171
172 The new OIDC Client manager app can be found at the following URL: [[https:~~/~~/wiki.ebrains.eu/bin/view/OIDC/>>https://wiki.ebrains.eu/bin/view/OIDC/]]. Please note you can only access this if you are a member of the [[Service developers group>>https://wiki.ebrains.eu/bin/view/Identity/#/groups/app-collaboratory-iam--service-providers]].
173
174 === **Collaboratory 2 release (2022-12-07) (Released)** ===
175
176 **Collaboratory.Lab **
177
178 * Dynamic environment variables
179 ** Notebook name, collab name and site hosting your Lab session will now always be available in a notebook, regardless of how you navigate to a notebook.
180 ** COLLAB_NAME has been renamed to COLLAB_TITLE to reflect its value.
181 * The Virtual Brain Library extension has been updated.
182
183 **Collaboratory.Wiki**
184
185 * The new [[OIDC client>>doc:Collabs.pauls-test-collab.Documentation IAM.FAQ.OIDC Clients explained.WebHome]] manager app is deployed to production ([[Found here>>https://wiki.ebrains.eu/bin/view/OIDC/]]). This app is for EBRAINS service developers and provides a UI where previously only an API was available. Its functionality includes:
186 ** Create new OIDC clients via the new UI
187 ** Find a full list of your existing OIDC clients
188 ** Easily edit and update any OIDC clients you have
189 ** NOTE: The client list does not show clients that you are a maintainer of, however, you can access the OIDC Client manager of a client by entering the clientId into the URL
190 * Add the possibility for OIDC client maintainers to add the service account related to the OIDC client to a [[collab's Team>>doc:Collabs.the-collaboratory.Documentation IAM.FAQ.Adding a service account to a Collab Team or a Group.WebHome]]
191 * Certain special characters were causing issues when put into a collab name, you can no longer use these special characters in a name.
192 * New field "has_bucket" was added to the API response describing collab. This allows users to quickly and easily see if a collab has a Bucket associated with it as a bucket is optional in a collab.
193 * When using the collab search page, you can now include filters in the URL. E.g [[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/#favorite=true>>https://wiki.ebrains.eu/bin/view/Collabs/#favorite=true]] will have the favourite filter selected by default when visiting the link
194
195 **Collaboratory.IAM**
196
197 * Verification emails are now sent out 15 days before your account needs re-verification. This means you can verify your account before it expires, preventing any potential interruption to access.
198
199 === **Collaboratory 2 release (2022-10-24) (Released)** ===
200
201 (% class="wikigeneratedid" %)
202 **Collaboratory.Lab **
203
204 * Deploying a new "Official EBRAINS release candidate" build of EBRAINS tools to the Lab.
205 ** Contains the latest version of participating tools.
206 ** Will become the new Official EBRAINS release if no issues are reported.
207
208 **Collaboratory.Wiki**
209
210 * Issues with resetting password while 2-factor authentication(2fa) was active or deactivating 2fa from your account have been resolved.
211
212 === **Collaboratory 2 release (2022-10-04)  (Released)** ===
213
214 **Collaboratory.Wiki**
215
216 * Improved search functionality
217 ** Collab descriptions are now also included in collab search, previously just title was used in the search
218 ** Search results are now far more accurate and relevant to the search terms
219 ** Users with large numbers of collabs no longer encounter unexpected search results
220 ** Collabs with special characters are now appropriately findable in the collab search
221
222 **Collaboratory.Lab**
223
224 * Fix for ipycanvas extension in latest image.
225
226 === **Collaboratory 2 release (2022-09-14)  (Released)** ===
227
228 **Collaboratory.Lab**
229
230 * Added Admin interface which allows greater ability to support users with their notebooks.
231 * Pre-fill git committer info with user info from IAM.
232
233 === **Collaboratory 2 release (2022-08-15) (Released)** ===
234
235 **Collaboratory.Wiki**
236
237 * OIDC App client creation fix now allows M2M flow.
238 * New API released to list OIDC clients you own. New API endpoint will be viewable [[here >>doc:Collabs.the-collaboratory.Documentation Wiki.API.WebHome]]after deployment.
239 * Misc. fixes.
240
241 === **Collaboratory 2 release (2022-06-28) (Released)** ===
242
243 **Collaboratory.IAM**
244
245 * First name and Last name are no longer editable via the identity manager
246
247 === **Collaboratory 2 release (2022-06-14) (Released)** ===
248
249 **Collaboratory.Lab**
250
251 * Integrated tvb-widgets ([[https:~~/~~/github.com/the-virtual-brain/tvb-widgets>>url:https://github.com/the-virtual-brain/tvb-widgets]])
252 * Fixed issue where kernel lost connection to the running notebook session
253 * Improved drive integration in the lab: Reduced “Cannot open” errors by initialising the relevant shared collab before the user session launches
254
255 === **Collaboratory 2 release (2022-06-09) (Released)** ===
256
257 **Collaboratory.Wiki**
258
259 * Fixed issue with collab search, results now return public collabs appropriately.
260 * Extended API of the OIDC client managers app. [[Read more.>>https://wiki.ebrains.eu/bin/view/Collabs/the-collaboratory/Documentation%20IAM/FAQ/OIDC%20Clients%20explained/1.%20Registering%20an%20OIDC%20client%20v2/]]
261 * Guest accounts: deploying script to deactivate guest accounts that have reached end of life.
262
263 **Collaboratory.Drive**
264
265 * Changes made to allow admins to monitor large file usage in the Drive.
266
267 === **Collaboratory 2 release (2022-05-12) (Released)** ===
268
269 **Collaboratory.Lab**
270
271 * Deploying an "Experimental" build of EBRAINS tools to the Lab.
272 ** Contains the latest version of participating tools.
273 ** Updated much more frequently than the official EBRAINS releases of participating tools.
274 ** Contrary to EBRAINS releases, experimental build only persists until the next deployment of the experimental build.
275 ** Please note that this is an experimental build, and as such, users should use it at their own risk. EBRAINS recommends the official releases instead.
276
277 === **Collaboratory 2 release (2022-05-11) (Released)** ===
278
279 **Collaboratory.Wiki**
280
281 * Fixing an issue discovered with users profile view.
282
283 === **Collaboratory 2 release (2022-05-10) (Released)** ===
284
285 **Collaboratory.Wiki**
286
287 * Guest account frontend released. To gain access please request sponsor role with justification via [[https:~~/~~/ebrains.eu/support>>https://ebrains.eu/support]]
288
289 === **Collaboratory 2 release (2022-04-26) (Released)** ===
290
291 **Collaboratory.Wiki**
292
293 * Update to guest account creation API.
294
295 === **Collaboratory 2 release (2022-04-12) (Released)** ===
296
297 **Collaboratory.Wiki**
298
299 * Initial guest account creation API released.
300
301 **Collaboratory.IAM**
302
303 * Initial version of updated OIDC client API released.
304
305 === **Collaboratory 2 release (2022-04-07) (Released)** ===
306
307 **Collaboratory.Wiki**
308
309 * Fixup on Units navigation UI
310 * New Collaboratory policies about public collabs, [[more info>>https://wiki.ebrains.eu/bin/view/Collabs/the-collaboratory/New%20Collaboratory.wiki%20policy/]]
311
312 === **Collaboratory 2 release (2022-04-04)(Released)** ===
313
314 The EBRAINS logo is being updated throughout all of our services.
315
316 **Collaboratory.IAM**
317
318 * Keycloak has been upgraded to version 15
319
320 Note: Developers using Spring boot 2.4.0 may encounter issues contacting our services, to avoid any issues please upgrade to Spring boot 2.6.4
321
322 === **Collaboratory 2 release (2022-03-22) (Released)** ===
323
324 **Collaboratory.Lab**
325
326 * Improved environment variables (more details in [[FAQ>>https://wiki.ebrains.eu/bin/view/Collabs/the-collaboratory/Documentation%20Lab/FAQ/Creating%20and%20accessing%20environment%20variables%20/]]):
327 ** Added variables for the Docker image version
328 ** Support for environment variables has been added for URLs specifying an execution site (e.g. lab.ch.ebrains.eu/...). Up to now, environment variables were only supported fo URLs to the generic lab.ebrains.eu/...
329 * Added a new extension in the Lab to monitor HPC jobs launched through the Unicore interface. More info [[here>>https://github.com/the-virtual-brain/tvb-ext-unicore]].
330 ** To activate the extension in the JupyterLab context menu: View -> Activate Command Palette -> PyUnicore Task Stream
331 * Added support for the [[SWIG>>http://www.swig.org/]] tool. SWIG allows C/C++ libraries to be accessed in Python.
332
333 **Collaboratory.Wiki**
334
335 * Updated footer.
336
337 **Collaboratory.Office**
338
339 * Added a plugin that will open the collab a document is contained in. [[Read more>>doc:Collabs.the-collaboratory.Documentation Office.FAQ.Accessing a document's collab.WebHome]].
340
341 **Collaboratory.Drive **
342
343 * Added a button that will open the collab a document is contained in. [[Read more>>doc:Collabs.the-collaboratory.Documentation Drive.FAQ.Accessing a parent collab from inside the Drive.WebHome]].
344
345 **OpenShift Dev cluster**
346
347 * The NFS disk storage for all persistent volumes is being increased.
348
349 === **Collaboratory 2 release (2022-02-22) (Released)** ===
350
351 **Collaboratory.Lab**
352
353 * A new R kernel has been implemented in the Lab. Users can now select this kernel to use the R language in notebooks.
354 * The ebrains-drive lib is now available by default in new notebooks. The "pip install" command is no longer needed for Collaboratory.Drive integration.
355
356 === **Collaboratory 2 release (2022-02-16) (Released)** ===
357
358 **Collaboratory.IAM**
359
360 * When EBRAINS users log in the first time, they have occasionally seen an error message. This is resolved by this deployment.
361
362 **Collaboratory.Lab**
363
364 * We have fixed an issue with SSL certificates while using certain Python modules (e.g. requests) in the Lab.
365
366 === **Collaboratory 2 release (2022-02-08) (Released)** ===
367
368 **Collaboratory.Wiki**
369
370 * All common navigation elements in a collab (Drive, Team, Lab, Bucket) are now grouped together at the top of the left navigation panel.
371
372 **Collaboratory.Lab**
373
374 * Updated JupyterLab image to use latest version
375 ** Adds a debugger to the Lab, allowing users to debug their notebooks.
376 ** Includes native git integration
377 ** Allows the user to install extensions to JupyterLab
378 * Fixed issues with notebook exports (and re-enabled native PDF export)
379 * Added [[nbgitpuller>>https://jupyterhub.github.io/nbgitpuller/]] support
380 * Set bash as the default shell in the terminal
381 * Updated the JupyterLab extension to make [[Lab URL query parameters>>doc:Collabs.the-collaboratory.Documentation Lab.FAQ.Creating and accessing environment variables .WebHome]] available (now works with direct links to a specific openshift cluster)
382 * Reduced Docker image size to improve Collaboratory Lab load times.
383 * Fixed unknown user id issue in the Lab container
384 * Updated Jupyter Hub version
385
386 === **Collaboratory 2 release (2022-01-25) (Delayed, Released 27th)** ===
387
388 **Collaboratory.Wiki**
389
390 * Adding a new API to delete collabs. Details found [[here>>doc:Collabs.the-collaboratory.Documentation Wiki.API.WebHome]] after release.
391 * The "Get Collab" API has been updated, you can now use this API to search for exact title. Details found [[here>>doc:Collabs.the-collaboratory.Documentation Wiki.API.WebHome]] after release.
392 * Updates to the maintenance banner.
393
394 === **Collaboratory 2 release (2022-01-17) (Released)** ===
395
396 **Collaboratory.Lab**
397
398 * We are re-enabling the Juelich site selection for running your Notebooks on.
399
400 === **Collaboratory 2 release (2022-01-11) (Released)** ===
401
402 **Collaboratory.Wiki**
403
404 * The new Toast that appears if you have not filled in your PLUS profile has been updated to take into account more scenarios. The message and links will change dynamically based on a users situation.
405 * Upgrading XWiki to latest patch version.
406 * New policy released regarding collabs. [[Read more>>doc:Collabs.the-collaboratory.New Collaboratory\.wiki policy.WebHome]]
407
408 **Collaboratory.Drive**
409
410 * File uploads are now limited to 1GB or below in size.
411
412 === **Collaboratory 2 release (2021-12-14) (Released)** ===
413
414 **Collaboratory.Lab**
415
416 * Idle Labs are now kept running for up to 12 hours before being automatically closed.
417 * The Lab is aware of a new permission regarding user quotas. Lab users will be asked to grant the Lab this permission in their next session.
418 * The "Experimental" image is now becoming the Official EBRAINS image while the current  "Official EBRAINS" image will now be deprecated.
419 * The option to choose the Julich site is temporarily being disabled.
420
421 **Collaboratory.Wiki**
422
423 * Removed inactive EBRAINS user accounts from the results of user searches. These include the list displayed when trying to add a user to a collab's Team.
424 * The wording of the email received when you need to re-verify your account has been updated.
425 * You can no longer create collabs with duplicate titles.
426 * When using the "Collabs" search, filters will no longer be applied by default; instead you now need to select what filters you want to apply.
427 * A "Toast" popup will now remind you to fill out your PLUS profile if you have not already done so.
428
429 **Collaboratory.Bucket (Data-proxy)**
430
431 * file picker option added in the data-proxy. Data Proxy front UI can be parametrized with 2 query parameters: redirect_uri  and redirect_title . Once the user has selected files/folders in the UI, and clicks on the redirect button, he is redirected to the specified redirect_uri. The redirect_title is optional and allows to customize the redirect button in the UI.
432 * There is a new query parameter folder . When the user browses a bucket, the folder parameter is updated. That allows the user to share a link to a specific folder.
433 * Public buckets are now visible to anyone authenticated in the UI
434 * Public / Private toggle is visible to everyone but disabled by default. Only administrators can update the bucket privacy status.
435
436 === **Collaboratory 2 release (2021-12-07) (Released)** ===
437
438 **Collaboratory.Lab**
439
440 * The Lab now loads the Drive of the selected collab before loading the Drive of other collabs the user has access to. This reduces the time it takes for the selected collab's Drive to be accessible when starting up the Lab. This applies both to users opening the Lab from the Wiki navigation or from a link to a specific notebook.
441 * Notebooks can be exported to various views from the File > Export Notebook as menu. Some of those export options were no longer working and have been removed.
442
443 **Collaboratory.Wiki**
444
445 * The guided tour of the Wiki for users logging in the first time has been removed. Instead, feel free to check out individual tool tutorials that you can find on our [[documentation page.>>doc:Collabs.the-collaboratory.WebHome]]
446
447 === **Collaboratory 2 release (2021-11-10) (Released)** ===
448
449 **Collaboratory.Drive**
450
451 * We are deploying an upgrade to the Drive which should resolve multiple issues and adds new features including:
452 ** It improves Drive performance which had caused issues with Lab sessions left idling by users.
453 ** Its web interface updates dynamically when new files are created/deleted/renamed in a sub-folder of a collab's Drive.
454 ** It adds a new search file by filename in a given collab's Drive.
455 ** It adds a new "column view" in the web UI for browsing files in a collab's Drive.
456 ** Its web UI groups the public (shared) links and smart (internal) links to be managed via a common button and pop-up.
457 ** Its web UI adds color tagging to individual files.
458
459 (% class="wikigeneratedid" %)
460 **Collaboratory.Lab**
461
462 * The new version provides access to Lab sessions with more RAM for authorized users. Authorization can be requested by contacting [[https:~~/~~/ebrains.eu/support>>https://ebrains.eu/support]] with a motivation.
463
464 === **Collaboratory 2 release (2021-10-19) (Released)** ===
465
466 **Collaboratory.Lab**
467
468 * We have now added the ability for users to request larger amounts of memory for notebooks. For now, the best way to gain access to these larger notebooks is to [[contact support>>https://ebrains.eu/support/]] to request access.
469
470 **Collaboratory.Bucket**
471
472 * Users now have the ability to copy files from one bucket to another. You can do this when initially creating a bucket or at any time after creation via the Bucket UI.
473
474 === **Collaboratory 2 release (2021-10-11) (Released)** ===
475
476 **Collaboratory.Lab**
477
478 * We are adding a new Python kernel to the Collaboratory Lab in which pre-installed neuroscience tools are readily available. The new kernel is the one with "//**EBRAINS**//" in its name. Available tools in that kernel can be listed with the command "//**module avail**//". The new kernel will be available in the experimental Docker image of the Lab.
479
480 === **Collaboratory 2 release (2021-09-14) (Released)** ===
481
482 **Collaboratory.Wiki**
483
484 * Collabs will now have a "Contact Administrator" button that allows users to send a message to the administrators of a collab. The administrators will receive the message along with the details of the user that has sent the message.
485
486 === **Collaboratory 2 release (2021-09-03) (Released)** ===
487
488 **Collaboratory.Wiki**
489
490 * A new API is available to retrieve users emails based off a username, this is only available to users with the appropriate rights and will be detailed in the [[Wiki API>>doc:Collabs.the-collaboratory.Documentation Wiki.API.WebHome]] .
491 * The User API will now also return the "mitreid-sub", a unique identifier carried over from Collaboratory 1 that will be maintained in Collaboratory 2.
492 * The GET Users endpoint is now only available for authenticated users.
493
494 === **Collaboratory 2 release (2021-08-31) (Released)** ===
495
496 **Collaboratory 1**
497
498 * Account creation has been removed from Collaboratory 1 in preparation for Collaboratory 1 shutdown.
499
500 **Collaboratory.IAM**
501
502 * Users registering on Collaboratory 2 will now have a 16 digit numerical "Mitreid-sub" generated. This allows services using the "mitreid-sub" on Collaboratory 1 to continue using this field on Collaboratory 2.
503
504 **Collaboratory.Wiki**
505
506 * The collab creation form has been updated. When users click on "Create" they will now see a popup window informing them of the progress of the collab creation.
507
508 === **Collaboratory 2 release (2021-08-17) (Released)** ===
509
510 **Collaboratory.IAM**
511
512 * Users can check in the Wiki for their [[past login events>>https://iam.ebrains.eu/auth/realms/hbp/account/log]] (or from the wiki > user profile icon > basic profile > logs). The IAM update will pass the correct IP address from which the user logged in, instead of displaying the IP address 127.0.0.1.
513
514 **Collaboratory.Lab**
515
516 * Added a form for the user to select the Fenix site to run notebooks on.
517 * Activated the Fenix Jülich Supercomputing Centre execution site.
518 * Users visiting the Lab before visiting the Drive will now receive an appropriate error message.
519 * New environment variables have been added in the Notebook environment with:
520 ** the notebook filename,
521 ** the name of the collab containing the notebook file in its Drive,
522 ** the Fenix site where the notebook is executed, and
523 ** the Docker image in which the notebook is executed.
524 * View our [[sample notebook>>https://lab.ebrains.eu/user-redirect/lab/tree/shared/The%20Collaboratory/lab_env.ipynb?LAB_TEST=1]] on how to access these variables. NOTE: This notebook will not work until after tonight's deployment.
525 * Read the [[FAQ>>doc:Collabs.the-collaboratory.Documentation Lab.FAQ.Creating and accessing environment variables .WebHome]] for creating your own custom environment variables.
526
527 === **Collaboratory 2 release (2021-08-03) (Released)** ===
528
529 **Collaboratory.Wiki**
530
531 * Change 2 endpoints of the Collaboratory [[Wiki API>>doc:Collabs.the-collaboratory.Documentation Wiki.API.WebHome]] to also accept a Keycloak sub unique identifier as a search parameter.
532
533 === **Collaboratory 2 release (2021-07-20) (Released)** ===
534
535 **Collaboratory.Wiki**
536
537 * Collaboratory deletion now removes the associated Drive from the name, preventing duplicate Drives.
538 * Copying links from the Identity manager now works correctly.
539 * Backend changes made in preparation for future releases.
540 * Complete redesign of the Documentation which you will find in [[The Collaboratory>>doc:Collabs.the-collaboratory.WebHome]] collab.
541
542 === **Collaboratory 2 release (2021-07-06) (Released)** ===
543
544 **Collaboratory.Lab**
545
546 * Fixes and improvements to pyplot and matplotlib.
547 * Added NGL Viewer to interactively view molecular structures.
548 * Fixed permission issues in the notebook docker images that was were causing some libraries to throw warnings, the .cache dir is now writeable.
549 * Images have been cleaned by removing unnecessary libraries.
550
551 **Collaboratory.IAM**
552
553 * Fixed an issue where a user would occasionally be unable to delete a newly created collab.
554
555 **Collaboratory.Drive**
556
557 * Fixed an issue where linking directly to a document in a newly created private collab would provide an "Unable to view file" error.
558
559 === **Collaboratory 2 release (2021-06-22) (Released)** ===
560
561 **Collaboratory.Lab**
562
563 * Official EBRAINS Docker image~: Added R and rpy2.
564 * Experimental Docker image for EBRAINS tool developers: NFS Mount will now be available for developers. Added gcc10 and image optimisations.
565
566 === **Collaboratory 2 release (2021-06-14) (Released)** ===
567
568 **Collaboratory.Wiki **
569
570 * Fixed an issue causing new collabs to not have a Drive present.
571
572 === **Collaboratory 2 release (2021-06-10) (Released)** ===
573
574 **Collaboratory.Wiki **
575
576 * A small bug fix for the collab search page.
577
578 === **Collaboratory 2 release (2021-06-08) (Released)** ===
579
580 **As well as individual services, we have also changed how announcements are made, if more than one announcement is being made you now see an arrow to the left of the announcement banner that you can use to switch between announcements.**
581
582 **Collaboratory.Wiki **
583
584 * Added more filters to Collab search, you can now filter on collabs where you are a viewer, an editor or an admin.
585 * Collab Creation and collab settings forms have been updated, more descriptions have been added and the private or public collab choice is now a radio button.
586 * Instructions on how to get your collab as a highlighted collab have been published, if you visit the collab search page you will find a link to this new page just above the highlighted collabs.
587 * The collab page editor has been replaced by a full page editor instead of the current inline editor being used.
588
589 **Collaboratory.Lab**
590
591 * Users can now choose between 2 different images when launching a notebook, most users should keep using the Official EBRAINS image, however tool developers can now work on the experimental image.
592
593 **Collaboratory.Bucket**
594
595 * The ability for users to create permanent links is now available via the UI by right clicking on any file and choosing "Manage public link".
596
597 === **Collaboratory 2 release (2021-05-11) (Released)** ===
598
599 **The Collaboratory release on 11th May represents a large change in the functionality of the collab search page. Please [[contact support>>https://ebrains.eu/support/]] if you encounter any issues with this new functionality, thank you.**
600
601 **Collaboratory.Wiki**
602
603 * Large update to the collab search page functionality
604 ** Look and feel has been improved
605 ** You will now see "Highlighted collabs" when initially arriving on the page
606 ** You can now filter by "My favourite" collabs - Showing only those collabs that you have favourited (Small heart symbol on top right of a collab page)
607
608 **Collaboratory.Lab**
609
610 * Neuron installation has been fixed and updated to latest version.
611 * The "Copy shareable link" menu entry in the file browser of the Lab should now produce a correct URL without manual intervention.
612 * You can now use Environment variables populated from a URL, [[more information>>https://wiki.ebrains.eu/bin/view/Collabs/the-collaboratory/how-to/Adding%20environment%20variables%20to%20Jupyter%20Notebooks/]]
613
614 **Collaboratory.Bucket**
615
616 * The ability for users to create permanent links is now available  (Via API only for now): [[API Documentation>>https://data-proxy.ebrains.eu/api/docs#/permalinks]]
617
618 === **Collaboratory 2 release (2021-04-28) (Partially released)** ===
619
620 **Due to the problem described in the "Drive issue" announcement, the Collaboratory release was delayed from 27th April to the 28th April**
621
622 **Collaboratory.Wiki**
623
624 * The new "Bucket" menu is now available in all collabs
625 * Various UI fixes.
626 * Collapsible macro styles have been updated.
627 * Fixed some issues with our Search functionality.
628 * Favourite collabs API has been developed for future integration into the UI.
629 * Added a report button to collabs, you can now report unused or inappropriate collabs.
630 * Issue for some users getting permission denied messages when they should not has been resolved.
631
632 **There was an issue during the release of the Lab, as such, the following has not yet been released and will be released on a different day.**
633
634 **Collaboratory.Lab**
635
636 * Nueron installation has been fixed and updated to latest version.
637 * The "Copy shareable link" button should now work without manual intervention.
638
639 === **Collaboratory 2 release (2021-04-13) (Released)** ===
640
641 **Collaboratory.Wiki**
642
643 * The new "Bucket" menu will be available in every new collab created, and will be rolled out to existing collab's in the coming days.
644 * Users logged into the wiki, should now automatically be logged into the lab in an iFrame instead of needing to login again.
645
646 === **Collaboratory 2 release (2021-03-30) (Released)** ===
647
648 The release going ahead on the 30th March will contain numerous upgrades and fixes throughout the Collaboratory Drive, Wiki and Lab.
649
650 **Collaboratory.Drive**
651
652 * Incorrect name formats are now automatically fixed
653 * Improvements to Automated tests.
654
655 **Collaboratory.Lab**
656
657 * Current Notebook image was rebuilt with extra extensions.  These are :  nbgitpuller,ipywidgets, jupyterlab-plotly, jupyter-matplotlib
658
659 **Collaboratory.Wiki**
660
661 * The "Favourite" button was moved to the top right of a collab page.
662 * New API added, this will allow users to get the Collab(CollabObject) via the DriveId - [[More information>>url:https://wiki.ebrains.eu/bin/view/Collabs/the-collaboratory/Technical%20documentation/For%20Developers/Collaboratory%20API/]]
663 * Highlighted Collabs is now a responsive design.
664 * Improvements to Automated tests.
665
666 Note: This release will cause all running containers to be reset.
667
668 === Wiki update (2021-03-02) **(Released)** ===
669
670 As well as numerous bug fixes and small improvements to the Wiki, we are also upgrading the current version of XWiki(Version 10.11.9) to the most recent version of XWiki (Version 12.10.2). We are also adding a few fixes to its integration in the Wiki front end . A new feature was added: a new "Like" (Represented by a [[image:https://a.slack-edge.com/production-standard-emoji-assets/13.0/google-medium/2764-fe0f.png||alt=":heart:"]]) feature that is now available on Collab pages. For now, it can be used to show support and approval for any Collab page you like and use, in the future, we will be expanding upon this functionality. 
671
672 If you would like to see new features or feel certain functionality is required to improve the Collaboratory, please [[join the Collaboratory user group>>url:https://wiki.ebrains.eu/bin/view/Collabs/collaboratory-user-group/Joining%20the%20group/]], once joined, please do not hesitate to [[make your suggestions>>url:https://drive.ebrains.eu/lib/aac38e36-4bd9-48ee-9ae6-b876a65028aa/file/Collaboratory%20User%20Group%20-%20Suggestion%20box.docx]].
673
674 === EBRAINS ticketing system (2021-03-02) **(Released)** ===
675
676 The categories of tickets are being aligned to the description of [[services on the EBRAINS.eu website>>url:https://ebrains.eu/services/]]. We are using this opportunity to also upgrade the ticketing system to a more recent version.
677
678 === Collaboratory 2 release (2021-02-17) **(Released)** ===
679
680 The release going ahead on 17th February has the following enhancements.
681
682
683 1. Mounting a new "Shared" drive for the ability to easily share links from Seafile. So going forward, any links that need to be shared should be generated in the "Shared " drive. The original "/drive" will be kept so it does not break any of the already existing links.
684 1. OnlyOffice is being upgraded to the latest version. This should solve the issue listed below in the "Files locked in the Drive " section. The section will remain temporarily until it is verified this issue is fully fixed.
685 1. Seafile file system is being increased
686
687 === Collaboratory 1 maintenance **(Released)** ===
688
689 Collaboratory 1 services will be down from 18:00 CET [[(my timezone)>>url:https://everytimezone.com/s/4a9daa55]] Thursday Jan 7 for maintenance. The services are being re-hosted from the EPFL/BBP infrastructure to the Fenix infrastructure. The OIDC authentication service will be reactivated first (within 30 minutes); all other services will follow in the evening. Once the Collaboratory 1 services are back online, you may find that files added to the storage within the last days do not initially appear. This will be remedied overnight as we synchronize the storage. Thank you for your patience and understanding.
690
691 As a reminder the Collaboratory 1 services are deprecated and will be shut down in September 2021.
692
693 If you encounter issues with Collaboratory 1 after Friday 12:00 CET, please contact [[https:~~/~~/ebrains.eu/support>>url:https://ebrains.eu/support]]
694
695 The re-hosting was completed on Thursday evening. Some services relying on the Collaboratory 1 may need to be restarted to take into account the new DNS entries. Please notify [[support>>url:https://ebrains.eu/support]] of any issues you identify.