Wiki source code of Releases

Version 63.1 by chaney08 on 2021/12/06 14:57
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2 === **Collaboratory 2 release (2021-12-07) ** ===
3
4 **Collaboratory.Lab**
5
6 * Lab loading had now been changed for shared links. If a user follows a shared link, that folder is loaded first, this means that when following a link to a particular document, then that document should be loaded when the user lands on the screen, instead of getting an error message about the file not existing.
7 * Export options that were no longer working have been removed.
8
9 **Collaboratory.Wiki**
10
11 * The tour has been removed from the wiki. Instead, feel free to check out individual tool tutorials you can find on our [[documentation page.>>doc:Collabs.the-collaboratory.WebHome]]
12
13 === **Collaboratory 2 release (2021-11-10) (Released)** ===
14
15 **Collaboratory.Drive**
16
17 * We are deploying an upgrade to the Drive which should resolve multiple issues and adds new features including:
18 ** It improves Drive performance which had caused issues with Lab sessions left idling by users.
19 ** Its web interface updates dynamically when new files are created/deleted/renamed in a sub-folder of a collab's Drive.
20 ** It adds a new search file by filename in a given collab's Drive.
21 ** It adds a new "column view" in the web UI for browsing files in a collab's Drive.
22 ** Its web UI groups the public (shared) links and smart (internal) links to be managed via a common button and pop-up.
23 ** Its web UI adds color tagging to individual files.
24
25 (% class="wikigeneratedid" %)
26 **Collaboratory.Lab**
27
28 * The new version provides access to Lab sessions with more RAM for authorized users. Authorization can be requested by contacting [[https:~~/~~/ebrains.eu/support>>https://ebrains.eu/support]] with a motivation.
29
30 === **Collaboratory 2 release (2021-10-19) (Released)** ===
31
32 **Collaboratory.Lab**
33
34 * We have now added the ability for users to request larger amounts of memory for notebooks. For now, the best way to gain access to these larger notebooks is to [[contact support>>https://ebrains.eu/support/]] to request access.
35
36 **Collaboratory.Bucket**
37
38 * Users now have the ability to copy files from one bucket to another. You can do this when initially creating a bucket or at any time after creation via the Bucket UI.
39
40 === **Collaboratory 2 release (2021-10-11) (Released)** ===
41
42 **Collaboratory.Lab**
43
44 * We are adding a new Python kernel to the Collaboratory Lab in which pre-installed neuroscience tools are readily available. The new kernel is the one with "//**EBRAINS**//" in its name. Available tools in that kernel can be listed with the command "//**module avail**//". The new kernel will be available in the experimental Docker image of the Lab.
45
46 === **Collaboratory 2 release (2021-09-14) (Released)** ===
47
48 **Collaboratory.Wiki**
49
50 * Collabs will now have a "Contact Administrator" button that allows users to send a message to the administrators of a collab. The administrators will receive the message along with the details of the user that has sent the message.
51
52 === **Collaboratory 2 release (2021-09-03) (Released)** ===
53
54 **Collaboratory.Wiki**
55
56 * A new API is available to retrieve users emails based off a username, this is only available to users with the appropriate rights and will be detailed in the [[Wiki API>>doc:Collabs.the-collaboratory.Documentation Wiki.API.WebHome]] .
57 * The User API will now also return the "mitreid-sub", a unique identifier carried over from Collaboratory 1 that will be maintained in Collaboratory 2.
58 * The GET Users endpoint is now only available for authenticated users.
59
60 === **Collaboratory 2 release (2021-08-31) (Released)** ===
61
62 **Collaboratory 1**
63
64 * Account creation has been removed from Collaboratory 1 in preparation for Collaboratory 1 shutdown.
65
66 **Collaboratory.IAM**
67
68 * Users registering on Collaboratory 2 will now have a 16 digit numerical "Mitreid-sub" generated. This allows services using the "mitreid-sub" on Collaboratory 1 to continue using this field on Collaboratory 2.
69
70 **Collaboratory.Wiki**
71
72 * The collab creation form has been updated. When users click on "Create" they will now see a popup window informing them of the progress of the collab creation.
73
74 === **Collaboratory 2 release (2021-08-17) (Released)** ===
75
76 **Collaboratory.IAM**
77
78 * Users can check in the Wiki for their [[past login events>>https://iam.ebrains.eu/auth/realms/hbp/account/log]] (or from the wiki > user profile icon > basic profile > logs). The IAM update will pass the correct IP address from which the user logged in, instead of displaying the IP address 127.0.0.1.
79
80 **Collaboratory.Lab**
81
82 * Added a form for the user to select the Fenix site to run notebooks on.
83 * Activated the Fenix Jülich Supercomputing Centre execution site.
84 * Users visiting the Lab before visiting the Drive will now receive an appropriate error message.
85 * New environment variables have been added in the Notebook environment with:
86 ** the notebook filename,
87 ** the name of the collab containing the notebook file in its Drive,
88 ** the Fenix site where the notebook is executed, and
89 ** the Docker image in which the notebook is executed.
90 * View our [[sample notebook>>https://lab.ebrains.eu/user-redirect/lab/tree/shared/The%20Collaboratory/lab_env.ipynb?LAB_TEST=1]] on how to access these variables. NOTE: This notebook will not work until after tonight's deployment.
91 * Read the [[FAQ>>doc:Collabs.the-collaboratory.Documentation Lab.FAQ.Creating and accessing environment variables .WebHome]] for creating your own custom environment variables.
92
93 === **Collaboratory 2 release (2021-08-03) (Released)** ===
94
95 **Collaboratory.Wiki**
96
97 * Change 2 endpoints of the Collaboratory [[Wiki API>>doc:Collabs.the-collaboratory.Documentation Wiki.API.WebHome]] to also accept a Keycloak sub unique identifier as a search parameter.
98
99 === **Collaboratory 2 release (2021-07-20) (Released)** ===
100
101 **Collaboratory.Wiki**
102
103 * Collaboratory deletion now removes the associated Drive from the name, preventing duplicate Drives.
104 * Copying links from the Identity manager now works correctly.
105 * Backend changes made in preparation for future releases.
106 * Complete redesign of the Documentation which you will find in [[The Collaboratory>>doc:Collabs.the-collaboratory.WebHome]] collab.
107
108 === **Collaboratory 2 release (2021-07-06) (Released)** ===
109
110 **Collaboratory.Lab**
111
112 * Fixes and improvements to pyplot and matplotlib.
113 * Added NGL Viewer to interactively view molecular structures.
114 * Fixed permission issues in the notebook docker images that was were causing some libraries to throw warnings, the .cache dir is now writeable.
115 * Images have been cleaned by removing unnecessary libraries.
116
117 **Collaboratory.IAM**
118
119 * Fixed an issue where a user would occasionally be unable to delete a newly created collab.
120
121 **Collaboratory.Drive**
122
123 * Fixed an issue where linking directly to a document in a newly created private collab would provide an "Unable to view file" error.
124
125 === **Collaboratory 2 release (2021-06-22) (Released)** ===
126
127 **Collaboratory.Lab**
128
129 * Official EBRAINS Docker image~: Added R and rpy2.
130 * Experimental Docker image for EBRAINS tool developers: NFS Mount will now be available for developers. Added gcc10 and image optimisations.
131
132 === **Collaboratory 2 release (2021-06-14) (Released)** ===
133
134 **Collaboratory.Wiki **
135
136 * Fixed an issue causing new collabs to not have a Drive present.
137
138 === **Collaboratory 2 release (2021-06-10) (Released)** ===
139
140 **Collaboratory.Wiki **
141
142 * A small bug fix for the collab search page.
143
144 === **Collaboratory 2 release (2021-06-08) (Released)** ===
145
146 **As well as individual services, we have also changed how announcements are made, if more than one announcement is being made you now see an arrow to the left of the announcement banner that you can use to switch between announcements.**
147
148 **Collaboratory.Wiki **
149
150 * Added more filters to Collab search, you can now filter on collabs where you are a viewer, an editor or an admin.
151 * Collab Creation and collab settings forms have been updated, more descriptions have been added and the private or public collab choice is now a radio button.
152 * Instructions on how to get your collab as a highlighted collab have been published, if you visit the collab search page you will find a link to this new page just above the highlighted collabs.
153 * The collab page editor has been replaced by a full page editor instead of the current inline editor being used.
154
155 **Collaboratory.Lab**
156
157 * Users can now choose between 2 different images when launching a notebook, most users should keep using the Official EBRAINS image, however tool developers can now work on the experimental image.
158
159 **Collaboratory.Bucket**
160
161 * The ability for users to create permanent links is now available via the UI by right clicking on any file and choosing "Manage public link".
162
163 === **Collaboratory 2 release (2021-05-11) (Released)** ===
164
165 **The Collaboratory release on 11th May represents a large change in the functionality of the collab search page. Please [[contact support>>https://ebrains.eu/support/]] if you encounter any issues with this new functionality, thank you.**
166
167 **Collaboratory.Wiki**
168
169 * Large update to the collab search page functionality
170 ** Look and feel has been improved
171 ** You will now see "Highlighted collabs" when initially arriving on the page
172 ** You can now filter by "My favourite" collabs - Showing only those collabs that you have favourited (Small heart symbol on top right of a collab page)
173
174 **Collaboratory.Lab**
175
176 * Neuron installation has been fixed and updated to latest version.
177 * The "Copy shareable link" menu entry in the file browser of the Lab should now produce a correct URL without manual intervention.
178 * You can now use Environment variables populated from a URL, [[more information>>https://wiki.ebrains.eu/bin/view/Collabs/the-collaboratory/how-to/Adding%20environment%20variables%20to%20Jupyter%20Notebooks/]]
179
180 **Collaboratory.Bucket**
181
182 * The ability for users to create permanent links is now available  (Via API only for now): [[API Documentation>>https://data-proxy.ebrains.eu/api/docs#/permalinks]]
183
184 === **Collaboratory 2 release (2021-04-28) (Partially released)** ===
185
186 **Due to the problem described in the "Drive issue" announcement, the Collaboratory release was delayed from 27th April to the 28th April**
187
188 **Collaboratory.Wiki**
189
190 * The new "Bucket" menu is now available in all collabs
191 * Various UI fixes.
192 * Collapsible macro styles have been updated.
193 * Fixed some issues with our Search functionality.
194 * Favourite collabs API has been developed for future integration into the UI.
195 * Added a report button to collabs, you can now report unused or inappropriate collabs.
196 * Issue for some users getting permission denied messages when they should not has been resolved.
197
198 **There was an issue during the release of the Lab, as such, the following has not yet been released and will be released on a different day.**
199
200 **Collaboratory.Lab**
201
202 * Nueron installation has been fixed and updated to latest version.
203 * The "Copy shareable link" button should now work without manual intervention.
204
205 === **Collaboratory 2 release (2021-04-13) (Released)** ===
206
207 **Collaboratory.Wiki**
208
209 * The new "Bucket" menu will be available in every new collab created, and will be rolled out to existing collab's in the coming days.
210 * Users logged into the wiki, should now automatically be logged into the lab in an iFrame instead of needing to login again.
211
212 === **Collaboratory 2 release (2021-03-30) (Released)** ===
213
214 The release going ahead on the 30th March will contain numerous upgrades and fixes throughout the Collaboratory Drive, Wiki and Lab.
215
216 **Collaboratory.Drive**
217
218 * Incorrect name formats are now automatically fixed
219 * Improvements to Automated tests.
220
221 **Collaboratory.Lab**
222
223 * Current Notebook image was rebuilt with extra extensions.  These are :  nbgitpuller,ipywidgets, jupyterlab-plotly, jupyter-matplotlib
224
225 **Collaboratory.Wiki**
226
227 * The "Favourite" button was moved to the top right of a collab page.
228 * New API added, this will allow users to get the Collab(CollabObject) via the DriveId - [[More information>>url:https://wiki.ebrains.eu/bin/view/Collabs/the-collaboratory/Technical%20documentation/For%20Developers/Collaboratory%20API/]]
229 * Highlighted Collabs is now a responsive design.
230 * Improvements to Automated tests.
231
232 Note: This release will cause all running containers to be reset.
233
234 === Wiki update (2021-03-02) **(Released)** ===
235
236 As well as numerous bug fixes and small improvements to the Wiki, we are also upgrading the current version of XWiki(Version 10.11.9) to the most recent version of XWiki (Version 12.10.2). We are also adding a few fixes to its integration in the Wiki front end . A new feature was added: a new "Like" (Represented by a [[image:https://a.slack-edge.com/production-standard-emoji-assets/13.0/google-medium/2764-fe0f.png||alt=":heart:"]]) feature that is now available on Collab pages. For now, it can be used to show support and approval for any Collab page you like and use, in the future, we will be expanding upon this functionality. 
237
238 If you would like to see new features or feel certain functionality is required to improve the Collaboratory, please [[join the Collaboratory user group>>url:https://wiki.ebrains.eu/bin/view/Collabs/collaboratory-user-group/Joining%20the%20group/]], once joined, please do not hesitate to [[make your suggestions>>url:https://drive.ebrains.eu/lib/aac38e36-4bd9-48ee-9ae6-b876a65028aa/file/Collaboratory%20User%20Group%20-%20Suggestion%20box.docx]].
239
240 === EBRAINS ticketing system (2021-03-02) **(Released)** ===
241
242 The categories of tickets are being aligned to the description of [[services on the EBRAINS.eu website>>url:https://ebrains.eu/services/]]. We are using this opportunity to also upgrade the ticketing system to a more recent version.
243
244 === Collaboratory 2 release (2021-02-17) **(Released)** ===
245
246 The release going ahead on 17th February has the following enhancements.
247
248
249 1. Mounting a new "Shared" drive for the ability to easily share links from Seafile. So going forward, any links that need to be shared should be generated in the "Shared " drive. The original "/drive" will be kept so it does not break any of the already existing links.
250 1. OnlyOffice is being upgraded to the latest version. This should solve the issue listed below in the "Files locked in the Drive " section. The section will remain temporarily until it is verified this issue is fully fixed.
251 1. Seafile file system is being increased
252
253 === Collaboratory 1 maintenance **(Released)** ===
254
255 Collaboratory 1 services will be down from 18:00 CET [[(my timezone)>>url:https://everytimezone.com/s/4a9daa55]] Thursday Jan 7 for maintenance. The services are being re-hosted from the EPFL/BBP infrastructure to the Fenix infrastructure. The OIDC authentication service will be reactivated first (within 30 minutes); all other services will follow in the evening. Once the Collaboratory 1 services are back online, you may find that files added to the storage within the last days do not initially appear. This will be remedied overnight as we synchronize the storage. Thank you for your patience and understanding.
256
257 As a reminder the Collaboratory 1 services are deprecated and will be shut down in September 2021.
258
259 If you encounter issues with Collaboratory 1 after Friday 12:00 CET, please contact [[https:~~/~~/ebrains.eu/support>>url:https://ebrains.eu/support]]
260
261 The re-hosting was completed on Thursday evening. Some services relying on the Collaboratory 1 may need to be restarted to take into account the new DNS entries. Please notify [[support>>url:https://ebrains.eu/support]] of any issues you identify.