Last modified by ldomide on 2024/04/08 12:55
From version 17.1
edited by ldomide
on 2020/06/26 22:16
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To version 7.2
edited by ldomide
on 2020/06/26 12:35
Change comment: There is no comment for this version

Summary

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Title
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1 -The Virtual Brain Multiscale Co-Simulation
1 +The Virtual Brain Multiscale
Content
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2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= (% style="color:inherit" %)TVB Co-Simulation [[image:https://github.com/the-virtual-brain/tvb-multiscale/blob/master/docs/documented_example_notebook/ConceptGraph.png?raw=true||alt="ConceptGraph.png" height="197" width="255"]] (%%) =
5 += (% style="color:inherit" %)TVB Co-Simulation(%%) =
6 6  
7 7  (% style="color:inherit" %)Multiscale: TVB - NEST
8 -
9 -(% style="color:inherit" %)Authors: (%%)D. Perdikis, L. Domide, J. Mersmann, M. Schirner, P. Ritter(% style="color:inherit" %)
10 10  )))
11 11  )))
12 12  
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14 14  (((
15 15  (% class="col-xs-12 col-sm-8" %)
16 16  (((
17 -For more details on TVB itself, check this: [[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain/>>url:https://wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain/]]
15 +== Contributors ==
18 18  
17 +Dionysios Perdikis, Lia Domide, Jochen Mersmann, Michael Schirner, Petra Ritter
18 +
19 19  == Use our Jupyter Hub setup online ==
20 20  
21 21  We have setup a Jupyter Hub service with tvb-nest as backed already prepared. You will only need an HBP account for accessing this: [[https:~~/~~/tvb-nest.apps.hbp.eu/>>url:https://tvb-nest.apps.hbp.eu/]]
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40 40  
41 41  This is the path recommended for people working closely with tvb-nest. They are able to download it in their local work env and code freely and fast with it.
42 42  
43 -== Running TVB-NEST jobs on CSCS infrastructure from HBP collab ==
43 +== Running tvb-nest jobs on CSCS infrastructure from HBP collab ==
44 44  
45 45  The CSCS and HBP Collab deployment of tvb-nest is a good example to show how tvb-nest can run with an HPC backend. This will be efficient when the simulation jobs are very large. From our experience, with small jobs, the stage-in/out time is considerable, and then the user might be better with just a local run. Also, this deployment requires that **the user have an active CSCS personal account**. More details on how to use this deployment can be found in this movie: [[https:~~/~~/drive.google.com/open?id=1osF263FK_NjhZcBJfpSy-F7qkbYs3Q-E>>url:https://drive.google.com/open?id=1osF263FK_NjhZcBJfpSy-F7qkbYs3Q-E]]
46 46  
Collaboratory.Apps.Collab.Code.CollabClass[0]
Description
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1 -Multiscale Co-Simulation with The Virtual Brain (TVB) and NEST.
2 -This space contains tutorials for configuring and running in HBP Collab simulations with TVB simulator in combination with the NEST simulator, and do co-simulations.
1 +Co-Simulation The Virtual Brain-multiscale. This space contains tutorials for configuring and running in HBP Collab simulations with TVB simulator in combination with the NEST simulator, and do a co-simulation. Full Brain Modeling. Human. Animal. EEG, MEG, SEEG, iEEG, BOLD. Large Scale Connectivity. Surface Simulations. TVB-multiscale co-simulation