Attention: Data Proxy will be migrated from SWIFT to S3 storage at Friday, the 9th of May 2025 starting from 9pm CEST (my timezone). For more details, please join the rocket chat channel https://chat.ebrains.eu/channel/data-proxy-user-group


TVB C -- High-speed parallel brain network models

Last modified by michaels on 2022/05/23 22:24

TVB C -- High-speed parallel brain network models

A fast implementation of The Virtual Brain brain network simulator

Direct link to notebook

4144.jpeg

What can I find here?

  • an IPython notebook that describes how to
    • pull the TVB-C container into one of the associated supercomputers using PyUnicore
    • upload model data to the supercomputer
    • set up and run simulations
    • download simulation results

How do I use it?

  • the simulation code is implemented as a Docker container
  • the container is executed on supercomputers and operated via IPython notebooks
  • Find the notebook by clicking on "Drive" in the left menu. The notebook is called "TVB_C.ipynb"
  • To use the notebook, download it onto your local filesystem, create a new Collab and upload it there.
  • Then, head over to https://lab.ebrains.eu/ to edit and run your notebook.
  • Depending on whether you created a public or a private notebook it will be accessible in either "drive/Shared with all" or "drive/Shared with groups'"

Metadata

Publications using TVB C

Contents