Last modified by michaels on 2022/05/23 22:24
From version 11.1
edited by michaels
on 2020/05/06 13:43
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To version 20.1
edited by michaels
on 2020/07/06 09:36
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Summary

Details

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Content
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6 6  
7 7  A fast implementation of The Virtual Brain brain network simulator
8 8  
9 -[[image:fasttvb.png]]
9 +[[Direct link to notebook>>https://drive.ebrains.eu/#my-libs/lib/f5e40b3b-91cb-4671-9178-4d2673ad8ac4]]
10 +
11 +[[image:4144.jpeg]]
10 10  )))
11 11  )))
12 12  
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14 14  (((
15 15  (% class="col-xs-12 col-sm-8" %)
16 16  (((
17 -= What can I find here? =
19 +(% class="wikigeneratedid" %)
20 +== Quick links ==
18 18  
22 +* [[TVB on EBRAINS (Short Version)>>https://www.youtube.com/watch?v=_G_DjRb1ams&feature=youtu.be||rel=" noopener noreferrer" target="_blank"]]
23 +* [[TVB on EBRAINS (Long Version)>>https://www.youtube.com/watch?v=eZrh6ztGFAY&feature=youtu.be||rel=" noopener noreferrer" target="_blank"]]
24 +* [[TVB on EBRAINS Mini Videos>>https://www.youtube.com/playlist?list=PLVtblERyzDeLcVv4BbW3BvmO8D-qVZxKf||rel=" noopener noreferrer" target="_blank"]]
25 +* [[User Story>>https://wiki.ebrains.eu/bin/view/Collabs/user-story-tvb/||rel=" noopener noreferrer" target="_blank"]]
26 +
27 +== What can I find here? ==
28 +
19 19  * an IPython notebook that describes how to
20 20  ** pull the TVB-C container into one of the associated supercomputers using PyUnicore
21 21  ** upload model data to the supercomputer
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30 30  * To use the notebook, download it onto your local filesystem, create a new Collab and upload it there.
31 31  * Then, head over to [[https:~~/~~/lab.ebrains.eu/>>url:https://lab.ebrains.eu/]] to edit and run your notebook.
32 32  * Depending on whether you created a public or a private notebook it will be accessible in either "drive/Shared with all" or "drive/Shared with groups'"
43 +
44 +== Metadata ==
45 +
46 +|=(((
47 +|=Category|tool
48 +|=Tags|(((
49 +* [[brain-network-model>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
50 +* [[TVB>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
51 +* [[high-performance>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
52 +* [[parallel>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
53 +* [[HPC>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
54 +* [[supercomputer>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
55 +* [[brain-simulation>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
56 +* [[connectome>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
57 +* [[functional-connectivity>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
58 +* [[The-Virtual-Brain>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
33 33  )))
60 +|=Partners|(((
61 +* Charité Universitätsmedizin Berlin [[CHARITE>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
62 +)))
63 +|=Maintainers|(((
64 +* [[Petra Ritter>>path:mailto:petra.ritter@charite.de]]
65 +* [[Michael Schirner>>path:mailto:michael.schirner@charite.de]]
66 +)))
67 +|=Homepage|[[https:~~/~~/hub.docker.com/r/thevirtualbrain/fast_tvb>>url:https://hub.docker.com/r/thevirtualbrain/fast_tvb]]
68 +|=Documentation|[[https:~~/~~/collab.humanbrainproject.eu/#/collab/65304/nav/444404>>url:https://collab.humanbrainproject.eu/#/collab/65304/nav/444404]]
69 +|=Support|[[michael.schirner@charite.de>>path:mailto:michael.schirner@charite.de]]
70 +|=Source Code|[[https:~~/~~/hub.docker.com/r/thevirtualbrain/fast_tvb>>url:https://hub.docker.com/r/thevirtualbrain/fast_tvb]]
71 +|=Download Page|[[https:~~/~~/hub.docker.com/r/thevirtualbrain/fast_tvb>>url:https://hub.docker.com/r/thevirtualbrain/fast_tvb]]
72 +|=License|GPL3
73 +|=Current Version|1.0
74 +|=All Versions|(((
75 +* 1.0
76 +)))
77 +)))
34 34  
79 +== Publications using TVB C ==
35 35  
81 +* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/29308767>>url:https://www.ncbi.nlm.nih.gov/pubmed/29308767]]
82 +* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/32194282>>url:https://www.ncbi.nlm.nih.gov/pubmed/32194282]]
83 +* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/29911173>>url:https://www.ncbi.nlm.nih.gov/pubmed/29911173]]
84 +* [[https:~~/~~/www.thieme-connect.com/products/ejournals/html/10.1055/s-0039-3403020>>url:https://www.thieme-connect.com/products/ejournals/html/10.1055/s-0039-3403020]]
85 +* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=31316116>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=31316116]]
86 +* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=30035018>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=30035018]]
87 +* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=27041212>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=27041212]]
88 +)))
89 +
90 +
36 36  (% class="col-xs-12 col-sm-4" %)
37 37  (((
38 38  {{box title="**Contents**"}}