Last modified by michaels on 2022/05/23 22:24
From version 17.1
edited by michaels
on 2020/05/06 14:28
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To version 7.1
edited by michaels
on 2020/05/04 16:06
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Summary

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1 -tool|CHARITE|brain network model|brain simulation|tvb|high performance|parallel|hpc|supercomputer|connectome|functional connectivity|the virtual brain
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5 5  = TVB C ~-~- High-speed parallel brain network models =
6 6  
7 7  A fast implementation of The Virtual Brain brain network simulator
8 -
9 -[[Direct link to notebook>>https://drive.ebrains.eu/#my-libs/lib/f5e40b3b-91cb-4671-9178-4d2673ad8ac4]]
10 -
11 -[[image:4144.jpeg]]
12 12  )))
13 13  )))
14 14  
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16 16  (((
17 17  (% class="col-xs-12 col-sm-8" %)
18 18  (((
19 -== What can I find here? ==
15 += What can I find here? =
20 20  
21 21  * an IPython notebook that describes how to
22 22  ** pull the TVB-C container into one of the associated supercomputers using PyUnicore
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23 23  ** upload model data to the supercomputer
24 24  ** set up and run simulations
25 25  ** download simulation results
26 -
27 -== How do I use it? ==
28 -
29 -* the simulation code is implemented as a Docker container
30 -* the container is executed on supercomputers and operated via IPython notebooks
31 -* Find the notebook by clicking on "Drive" in the left menu. The notebook is called "TVB_C.ipynb"
32 -* To use the notebook, download it onto your local filesystem, create a new Collab and upload it there.
33 -* Then, head over to [[https:~~/~~/lab.ebrains.eu/>>url:https://lab.ebrains.eu/]] to edit and run your notebook.
34 -* Depending on whether you created a public or a private notebook it will be accessible in either "drive/Shared with all" or "drive/Shared with groups'"
35 -
36 -== Metadata ==
37 -
38 -* Partners: Charité Universitätsmedizin Berlin
39 -* Developer: Michael Schirner (michael.schirner@charite.de)
40 -* Homepage: [[https:~~/~~/hub.docker.com/r/thevirtualbrain/fast_tvb>>url:https://hub.docker.com/r/thevirtualbrain/fast_tvb]]
41 -* Github: [[https:~~/~~/github.com/BrainModes/fast_tvb>>url:https://github.com/BrainModes/fast_tvb]]
42 -* License: GPL3
43 -* Version: 1.0
44 -
45 -== Publications using TVB C ==
46 -
47 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/29308767>>url:https://www.ncbi.nlm.nih.gov/pubmed/29308767]]
48 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/32194282>>url:https://www.ncbi.nlm.nih.gov/pubmed/32194282]]
49 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/29911173>>url:https://www.ncbi.nlm.nih.gov/pubmed/29911173]]
50 -* [[https:~~/~~/www.thieme-connect.com/products/ejournals/html/10.1055/s-0039-3403020>>url:https://www.thieme-connect.com/products/ejournals/html/10.1055/s-0039-3403020]]
51 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=31316116>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=31316116]]
52 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=30035018>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=30035018]]
53 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=27041212>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=27041212]]
54 54  )))
55 55  
56 56  
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