Changes for page TVB C -- High-speed parallel brain network models
Last modified by michaels on 2022/05/23 22:24
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... ... @@ -1,1 +1,0 @@ 1 -tool|CHARITE|brain network model|brain simulation|tvb|high performance|parallel|hpc|supercomputer|connectome|functional connectivity|the virtual brain - Content
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... ... @@ -2,13 +2,9 @@ 2 2 ((( 3 3 (% class="container" %) 4 4 ((( 5 -= TVBC~-~- High-speed parallel brainnetwork models=5 += My Collab's Extended Title = 6 6 7 -A fast implementation of The Virtual Brain brain network simulator 8 - 9 -[[Direct link to notebook>>https://drive.ebrains.eu/#my-libs/lib/f5e40b3b-91cb-4671-9178-4d2673ad8ac4]] 10 - 11 -[[image:4144.jpeg]] 7 +My collab's subtitle 12 12 ))) 13 13 ))) 14 14 ... ... @@ -16,70 +16,18 @@ 16 16 ((( 17 17 (% class="col-xs-12 col-sm-8" %) 18 18 ((( 19 -= =What can I find here? ==15 += What can I find here? = 20 20 21 -* an IPython notebook that describes how to 22 -** pull the TVB-C container into one of the associated supercomputers using PyUnicore 23 -** upload model data to the supercomputer 24 -** set up and run simulations 25 -** download simulation results 17 +* Notice how the table of contents on the right 18 +* is automatically updated 19 +* to hold this page's headers 26 26 27 -= =Howdo I useit? ==21 += Who has access? = 28 28 29 -* the simulation code is implemented as a Docker container 30 -* the container is executed on supercomputers and operated via IPython notebooks 31 -* Find the notebook by clicking on "Drive" in the left menu. The notebook is called "TVB_C.ipynb" 32 -* To use the notebook, download it onto your local filesystem, create a new Collab and upload it there. 33 -* Then, head over to [[https:~~/~~/lab.ebrains.eu/>>url:https://lab.ebrains.eu/]] to edit and run your notebook. 34 -* Depending on whether you created a public or a private notebook it will be accessible in either "drive/Shared with all" or "drive/Shared with groups'" 35 - 36 -== Metadata == 37 - 38 -|=((( 39 -|=Category|tool 40 -|=Tags|((( 41 -* [[brain-network-model>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 42 -* [[TVB>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 43 -* [[high-performance>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 44 -* [[parallel>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 45 -* [[HPC>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 46 -* [[supercomputer>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 47 -* [[brain-simulation>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 48 -* [[connectome>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 49 -* [[functional-connectivity>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 50 -* [[The-Virtual-Brain>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 23 +Describe the audience of this collab. 51 51 ))) 52 -|=Partners|((( 53 -* Charité Universitätsmedizin Berlin [[CHARITE>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 54 -))) 55 -|=Maintainers|((( 56 -* [[Petra Ritter>>path:mailto:petra.ritter@charite.de]] 57 -* [[Michael Schirner>>path:mailto:michael.schirner@charite.de]] 58 -))) 59 -|=Homepage|[[https:~~/~~/hub.docker.com/r/thevirtualbrain/fast_tvb>>url:https://hub.docker.com/r/thevirtualbrain/fast_tvb]] 60 -|=Documentation|[[https:~~/~~/collab.humanbrainproject.eu/#/collab/65304/nav/444404>>url:https://collab.humanbrainproject.eu/#/collab/65304/nav/444404]] 61 -|=Support|[[michael.schirner@charite.de>>path:mailto:michael.schirner@charite.de]] 62 -|=Source Code|[[https:~~/~~/hub.docker.com/r/thevirtualbrain/fast_tvb>>url:https://hub.docker.com/r/thevirtualbrain/fast_tvb]] 63 -|=Download Page|[[https:~~/~~/hub.docker.com/r/thevirtualbrain/fast_tvb>>url:https://hub.docker.com/r/thevirtualbrain/fast_tvb]] 64 -|=License|GPL3 65 -|=Current Version|1.0 66 -|=All Versions|((( 67 -* 1.0 68 -))) 69 -))) 70 70 71 -== Publications using TVB C == 72 72 73 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/29308767>>url:https://www.ncbi.nlm.nih.gov/pubmed/29308767]] 74 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/32194282>>url:https://www.ncbi.nlm.nih.gov/pubmed/32194282]] 75 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/29911173>>url:https://www.ncbi.nlm.nih.gov/pubmed/29911173]] 76 -* [[https:~~/~~/www.thieme-connect.com/products/ejournals/html/10.1055/s-0039-3403020>>url:https://www.thieme-connect.com/products/ejournals/html/10.1055/s-0039-3403020]] 77 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=31316116>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=31316116]] 78 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=30035018>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=30035018]] 79 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=27041212>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=27041212]] 80 -))) 81 - 82 - 83 83 (% class="col-xs-12 col-sm-4" %) 84 84 ((( 85 85 {{box title="**Contents**"}}
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