Changes for page TVB C -- High-speed parallel brain network models
Last modified by michaels on 2022/05/23 22:24
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... ... @@ -1,1 +1,0 @@ 1 -tool|CHARITE|brain network model|brain simulation|tvb|high performance|parallel|hpc|supercomputer|connectome|functional connectivity|the virtual brain - Content
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... ... @@ -5,10 +5,6 @@ 5 5 = TVB C ~-~- High-speed parallel brain network models = 6 6 7 7 A fast implementation of The Virtual Brain brain network simulator 8 - 9 -[[Direct link to notebook>>https://drive.ebrains.eu/#my-libs/lib/f5e40b3b-91cb-4671-9178-4d2673ad8ac4]] 10 - 11 -[[image:4144.jpeg]] 12 12 ))) 13 13 ))) 14 14 ... ... @@ -16,78 +16,16 @@ 16 16 ((( 17 17 (% class="col-xs-12 col-sm-8" %) 18 18 ((( 19 -(% class="wikigeneratedid" %) 20 -== Quick links == 15 += What can I find here? = 21 21 22 -* [[TVB on EBRAINS (Short Version)>>https://www.youtube.com/watch?v=_G_DjRb1ams&feature=youtu.be||rel=" noopener noreferrer" target="_blank"]] 23 -* [[TVB on EBRAINS (Long Version)>>https://www.youtube.com/watch?v=eZrh6ztGFAY&feature=youtu.be||rel=" noopener noreferrer" target="_blank"]] 24 -* [[TVB on EBRAINS Mini Videos>>https://www.youtube.com/playlist?list=PLVtblERyzDeLcVv4BbW3BvmO8D-qVZxKf||rel=" noopener noreferrer" target="_blank"]] 25 -* [[User Story>>https://wiki.ebrains.eu/bin/view/Collabs/user-story-tvb/||rel=" noopener noreferrer" target="_blank"]] 26 - 27 -== What can I find here? == 28 - 29 29 * an IPython notebook that describes how to 30 30 ** pull the TVB-C container into one of the associated supercomputers using PyUnicore 31 31 ** upload model data to the supercomputer 32 32 ** set up and run simulations 33 33 ** download simulation results 34 - 35 -== How do I use it? == 36 - 37 -* the simulation code is implemented as a Docker container 38 -* the container is executed on supercomputers and operated via IPython notebooks 39 -* Find the notebook by clicking on "Drive" in the left menu. The notebook is called "TVB_C.ipynb" 40 -* To use the notebook, download it onto your local filesystem, create a new Collab and upload it there. 41 -* Then, head over to [[https:~~/~~/lab.ebrains.eu/>>url:https://lab.ebrains.eu/]] to edit and run your notebook. 42 -* Depending on whether you created a public or a private notebook it will be accessible in either "drive/Shared with all" or "drive/Shared with groups'" 43 - 44 -== Metadata == 45 - 46 -|=((( 47 -|=Category|tool 48 -|=Tags|((( 49 -* [[brain-network-model>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 50 -* [[TVB>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 51 -* [[high-performance>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 52 -* [[parallel>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 53 -* [[HPC>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 54 -* [[supercomputer>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 55 -* [[brain-simulation>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 56 -* [[connectome>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 57 -* [[functional-connectivity>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 58 -* [[The-Virtual-Brain>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 59 59 ))) 60 -|=Partners|((( 61 -* Charité Universitätsmedizin Berlin [[CHARITE>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]] 62 -))) 63 -|=Maintainers|((( 64 -* [[Petra Ritter>>path:mailto:petra.ritter@charite.de]] 65 -* [[Michael Schirner>>path:mailto:michael.schirner@charite.de]] 66 -))) 67 -|=Homepage|[[https:~~/~~/hub.docker.com/r/thevirtualbrain/fast_tvb>>url:https://hub.docker.com/r/thevirtualbrain/fast_tvb]] 68 -|=Documentation|[[https:~~/~~/collab.humanbrainproject.eu/#/collab/65304/nav/444404>>url:https://collab.humanbrainproject.eu/#/collab/65304/nav/444404]] 69 -|=Support|[[michael.schirner@charite.de>>path:mailto:michael.schirner@charite.de]] 70 -|=Source Code|[[https:~~/~~/hub.docker.com/r/thevirtualbrain/fast_tvb>>url:https://hub.docker.com/r/thevirtualbrain/fast_tvb]] 71 -|=Download Page|[[https:~~/~~/hub.docker.com/r/thevirtualbrain/fast_tvb>>url:https://hub.docker.com/r/thevirtualbrain/fast_tvb]] 72 -|=License|GPL3 73 -|=Current Version|1.0 74 -|=All Versions|((( 75 -* 1.0 76 -))) 77 -))) 78 78 79 -== Publications using TVB C == 80 80 81 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/29308767>>url:https://www.ncbi.nlm.nih.gov/pubmed/29308767]] 82 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/32194282>>url:https://www.ncbi.nlm.nih.gov/pubmed/32194282]] 83 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/29911173>>url:https://www.ncbi.nlm.nih.gov/pubmed/29911173]] 84 -* [[https:~~/~~/www.thieme-connect.com/products/ejournals/html/10.1055/s-0039-3403020>>url:https://www.thieme-connect.com/products/ejournals/html/10.1055/s-0039-3403020]] 85 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=31316116>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=31316116]] 86 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=30035018>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=30035018]] 87 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=27041212>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=27041212]] 88 -))) 89 - 90 - 91 91 (% class="col-xs-12 col-sm-4" %) 92 92 ((( 93 93 {{box title="**Contents**"}}
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