Last modified by michaels on 2022/05/23 22:24
From version 7.1
edited by michaels
on 2020/05/04 16:06
Change comment: There is no comment for this version
To version 16.1
edited by michaels
on 2020/05/06 14:18
Change comment: There is no comment for this version

Summary

Details

Page properties
Tags
... ... @@ -1,0 +1,1 @@
1 +tool|CHARITE|brain network model|brain simulation|tvb|high performance|parallel|hpc|supercomputer|connectome|functional connectivity|the virtual brain
Content
... ... @@ -5,6 +5,8 @@
5 5  = TVB C ~-~- High-speed parallel brain network models =
6 6  
7 7  A fast implementation of The Virtual Brain brain network simulator
8 +
9 +[[image:4144.jpeg]]
8 8  )))
9 9  )))
10 10  
... ... @@ -12,7 +12,7 @@
12 12  (((
13 13  (% class="col-xs-12 col-sm-8" %)
14 14  (((
15 -= What can I find here? =
17 +== What can I find here? ==
16 16  
17 17  * an IPython notebook that describes how to
18 18  ** pull the TVB-C container into one of the associated supercomputers using PyUnicore
... ... @@ -19,6 +19,34 @@
19 19  ** upload model data to the supercomputer
20 20  ** set up and run simulations
21 21  ** download simulation results
24 +
25 +== How do I use it? ==
26 +
27 +* the simulation code is implemented as a Docker container
28 +* the container is executed on supercomputers and operated via IPython notebooks
29 +* Find the notebook by clicking on "Drive" in the left menu. The notebook is called "TVB_C.ipynb"
30 +* To use the notebook, download it onto your local filesystem, create a new Collab and upload it there.
31 +* Then, head over to [[https:~~/~~/lab.ebrains.eu/>>url:https://lab.ebrains.eu/]] to edit and run your notebook.
32 +* Depending on whether you created a public or a private notebook it will be accessible in either "drive/Shared with all" or "drive/Shared with groups'"
33 +
34 +== Metadata ==
35 +
36 +* Partners: Charité Universitätsmedizin Berlin
37 +* Developer: Michael Schirner (michael.schirner@charite.de)
38 +* Homepage: [[https:~~/~~/hub.docker.com/r/thevirtualbrain/fast_tvb>>url:https://hub.docker.com/r/thevirtualbrain/fast_tvb]]
39 +* Github: [[https:~~/~~/github.com/BrainModes/fast_tvb>>url:https://github.com/BrainModes/fast_tvb]]
40 +* License: GPL3
41 +* Version: 1.0
42 +
43 +== Publications using TVB C ==
44 +
45 +* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/29308767>>url:https://www.ncbi.nlm.nih.gov/pubmed/29308767]]
46 +* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/32194282>>url:https://www.ncbi.nlm.nih.gov/pubmed/32194282]]
47 +* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/29911173>>url:https://www.ncbi.nlm.nih.gov/pubmed/29911173]]
48 +* [[https:~~/~~/www.thieme-connect.com/products/ejournals/html/10.1055/s-0039-3403020>>url:https://www.thieme-connect.com/products/ejournals/html/10.1055/s-0039-3403020]]
49 +* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=31316116>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=31316116]]
50 +* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=30035018>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=30035018]]
51 +* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=27041212>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=27041212]]
22 22  )))
23 23  
24 24  
4144.jpeg
Author
... ... @@ -1,0 +1,1 @@
1 +XWiki.michaels
Size
... ... @@ -1,0 +1,1 @@
1 +146.3 KB
Content
fasttvb.png
Author
... ... @@ -1,0 +1,1 @@
1 +XWiki.michaels
Size
... ... @@ -1,0 +1,1 @@
1 +36.4 KB
Content