Version 15.1 by michaels on 2020/05/06 14:17
Hide last authors
michaels 1.1 1 (% class="jumbotron" %)
2 (((
3 (% class="container" %)
4 (((
michaels 7.1 5 = TVB C ~-~- High-speed parallel brain network models =
michaels 1.1 6
michaels 7.1 7 A fast implementation of The Virtual Brain brain network simulator
michaels 10.1 8
michaels 12.1 9 [[image:4144.jpeg]]
michaels 1.1 10 )))
11 )))
12
13 (% class="row" %)
14 (((
15 (% class="col-xs-12 col-sm-8" %)
16 (((
michaels 13.1 17 == What can I find here? ==
michaels 1.1 18
michaels 7.1 19 * an IPython notebook that describes how to
20 ** pull the TVB-C container into one of the associated supercomputers using PyUnicore
21 ** upload model data to the supercomputer
22 ** set up and run simulations
23 ** download simulation results
michaels 8.1 24
25 == How do I use it? ==
26
27 * the simulation code is implemented as a Docker container
28 * the container is executed on supercomputers and operated via IPython notebooks
29 * Find the notebook by clicking on "Drive" in the left menu. The notebook is called "TVB_C.ipynb"
30 * To use the notebook, download it onto your local filesystem, create a new Collab and upload it there.
31 * Then, head over to [[https:~~/~~/lab.ebrains.eu/>>url:https://lab.ebrains.eu/]] to edit and run your notebook.
32 * Depending on whether you created a public or a private notebook it will be accessible in either "drive/Shared with all" or "drive/Shared with groups'"
michaels 13.1 33
michaels 14.1 34 == Metadata ==
michaels 13.1 35
michaels 14.1 36 * Partners: Charité Universitätsmedizin Berlin
37 * Developer: Michael Schirner (michael.schirner@charite.de)
38 * Homepage: [[https:~~/~~/hub.docker.com/r/thevirtualbrain/fast_tvb>>url:https://hub.docker.com/r/thevirtualbrain/fast_tvb]]
39 * License: GPL3
40 * Version: 1.0
michaels 13.1 41
michaels 15.1 42 == Publications using TVB C ==
43
44 * [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/29308767>>url:https://www.ncbi.nlm.nih.gov/pubmed/29308767]]
45 * [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/32194282>>url:https://www.ncbi.nlm.nih.gov/pubmed/32194282]]
46 * [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/29911173>>url:https://www.ncbi.nlm.nih.gov/pubmed/29911173]]
47 * [[https:~~/~~/www.thieme-connect.com/products/ejournals/html/10.1055/s-0039-3403020>>url:https://www.thieme-connect.com/products/ejournals/html/10.1055/s-0039-3403020]]
48 * [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=31316116>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=31316116]]
49 * [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=30035018>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=30035018]]
50 * [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=27041212>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=27041212]]
michaels 1.1 51 )))
52
53
54 (% class="col-xs-12 col-sm-4" %)
55 (((
56 {{box title="**Contents**"}}
57 {{toc/}}
58 {{/box}}
59
60
61 )))
62 )))