Version 16.1 by michaels on 2020/05/06 14:18
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5 = TVB C ~-~- High-speed parallel brain network models =
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7 A fast implementation of The Virtual Brain brain network simulator
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9 [[image:4144.jpeg]]
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17 == What can I find here? ==
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19 * an IPython notebook that describes how to
20 ** pull the TVB-C container into one of the associated supercomputers using PyUnicore
21 ** upload model data to the supercomputer
22 ** set up and run simulations
23 ** download simulation results
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25 == How do I use it? ==
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27 * the simulation code is implemented as a Docker container
28 * the container is executed on supercomputers and operated via IPython notebooks
29 * Find the notebook by clicking on "Drive" in the left menu. The notebook is called "TVB_C.ipynb"
30 * To use the notebook, download it onto your local filesystem, create a new Collab and upload it there.
31 * Then, head over to [[https:~~/~~/lab.ebrains.eu/>>url:https://lab.ebrains.eu/]] to edit and run your notebook.
32 * Depending on whether you created a public or a private notebook it will be accessible in either "drive/Shared with all" or "drive/Shared with groups'"
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34 == Metadata ==
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36 * Partners: Charité Universitätsmedizin Berlin
37 * Developer: Michael Schirner (michael.schirner@charite.de)
38 * Homepage: [[https:~~/~~/hub.docker.com/r/thevirtualbrain/fast_tvb>>url:https://hub.docker.com/r/thevirtualbrain/fast_tvb]]
39 * Github: [[https:~~/~~/github.com/BrainModes/fast_tvb>>url:https://github.com/BrainModes/fast_tvb]]
40 * License: GPL3
41 * Version: 1.0
42
43 == Publications using TVB C ==
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45 * [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/29308767>>url:https://www.ncbi.nlm.nih.gov/pubmed/29308767]]
46 * [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/32194282>>url:https://www.ncbi.nlm.nih.gov/pubmed/32194282]]
47 * [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/29911173>>url:https://www.ncbi.nlm.nih.gov/pubmed/29911173]]
48 * [[https:~~/~~/www.thieme-connect.com/products/ejournals/html/10.1055/s-0039-3403020>>url:https://www.thieme-connect.com/products/ejournals/html/10.1055/s-0039-3403020]]
49 * [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=31316116>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=31316116]]
50 * [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=30035018>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=30035018]]
51 * [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=27041212>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=27041212]]
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57 {{box title="**Contents**"}}
58 {{toc/}}
59 {{/box}}
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