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1 -4th TVB in EBRAINS TVB-multiscale cosimulation hands-on session
1 +5th TVB in EBRAINS TVB-multiscale cosimulation hands-on session
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1 1  (% class="wikigeneratedid" %)
2 -//McGill University "Summer School in Nonlinear Dynamics for the Life Sciences with Applications to Neuroscience and Psychology" (June 2021)//
2 +What can I find here?
3 3  
4 -== What can I find here? ==
4 +* A Jupyter notebook [[BasalHomework.ipynb>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/MacGillSummerSchool/Homework/BasalGangliaHomework.ipynb]] used for the hands-on session
5 +* A Jupyter notebook [[BasalHomeworkSolved.ipynb>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/MacGillSummerSchool/Homework/BasalGangliaHomework.ipynb||style="background-color: rgb(255, 255, 255);"]] with all the solutions to the session, which will be posted right after the session is over.
5 5  
6 -* [[Homework materials>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/MacGillSummerSchool/Homework]] including a use case of a TVB - Spiking Basal Ganglia multiscale cosimulation notebook (see also attached .zip file at the current page)
7 -* [[Homework solutions>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/MacGillSummerSchool/HomeworkSolutions.zip]] and [[Homework solutions' outputs>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/MacGillSummerSchool/HomeworkSolutionsOutputs.zip]] (see also attached .zip files at the current page; password protected)
8 -
9 9  === Guide to run the use-case notebook ===
10 10  
11 11  1. Run the TVB-NEST app by browsing to [[https:~~/~~/tvb-nest.apps.hbp.eu/>>url:https://tvb-nest.apps.hbp.eu/]] and logging in with your EBRAINS account.
12 12  1. Navigate to "ContributedNotebooks" folder, which offers persistent storage for EBRAINS users.
13 -1. You will need the notebook [[BasalGangliaHomework.ipynb>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/MacGillSummerSchool/Homework/BasalGangliaHomework.ipynb]], the data folder [[basal_ganglia_conn>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/MacGillSummerSchool/Homework/basal_ganglia_conn]], and the pictures folder [[pics>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/MacGillSummerSchool/Homework/pics]], found in the [[drive folder "Homework/McGillSummerSchool>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/MacGillSummerSchool/Homework]]. All materials can also be found as a .zip file "Homework.zip" attached to the current page (scroll down to find it).
11 +1. You will need the notebook [[BasalHomework.ipynb>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/MacGillSummerSchool/Homework/BasalGangliaHomework.ipynb]], the data folder [[basal_ganglia_conn>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/5thTVBinEBRAINSworkshop/basal_ganglia_conn]], and the pictures folder [[pics>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/5thTVBinEBRAINSworkshop/pics]], found in the [[drive folder "Homework/5thTVBinEBRAINSworkshop>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/5thTVBinEBRAINSworkshop]]5thTVBinEBRAINSworkshop. All materials can also be found as a .zip file "Homework.zip" attached to the current page (scroll down to find it).
14 14  1. The easiest way to get the above materials is to upload "Homework.zip" to "ContributedNotebooks" folder, and run the command
15 15  ! unzip ./Homework.zip
16 16  on a cell of a new notebook, from within the same folder.