Wiki source code of 5th TVB in EBRAINS TVB-multiscale cosimulation hands-on session
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8.1 | 2 | What can I find here? |
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10.1 | 4 | * A Jupyter notebook [[BasalGanglia.ipynb>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/5thTVBinEBRAINSworkshop/BasalGanglia.ipynb]] used for the hands-on session |
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9.1 | 5 | * A Jupyter notebook BasalHomeworkSolved.ipynb with all the solutions to the session, which will be posted right after the session is over. |
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| 7 | === Guide to run the use-case notebook === | ||
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| 9 | 1. Run the TVB-NEST app by browsing to [[https:~~/~~/tvb-nest.apps.hbp.eu/>>url:https://tvb-nest.apps.hbp.eu/]] and logging in with your EBRAINS account. | ||
| 10 | 1. Navigate to "ContributedNotebooks" folder, which offers persistent storage for EBRAINS users. | ||
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16.1 | 11 | 1. You will need the notebook [[BasalGanglia.ipynb>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/5thTVBinEBRAINSworkshop/BasalGanglia.ipynb]], the data folder [[basal_ganglia_conn>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/5thTVBinEBRAINSworkshop/basal_ganglia_conn]], and the pictures folder [[pics>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/5thTVBinEBRAINSworkshop/pics]], found in the [[drive folder "5thTVBinEBRAINSworkshop>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/5thTVBinEBRAINSworkshop]]. All materials can also be found at the file "[[HandsOn.zip>>https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/4th%20TVB%20in%20EBRAINS%20TVB-multiscale%20cosimulation%20hands-on%20session/WebHome/HandsOn.zip?rev=1.1]]" attached to the current page (scroll down to find it). |
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10.1 | 12 | 1. The easiest way to get the above materials is to upload "HandsOn.zip" to "ContributedNotebooks" folder, and run the command |
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15.1 | 13 | ! unzip ./HandsOn.zip |
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1.1 | 14 | on a cell of a new notebook, from within the same folder. |
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10.1 | 15 | 1. Finally, navigate inside the decompressed HandsOn folder and run the notebook BasalGanglia.ipynb. Your results will be saved in your personal drive space and can be found in the "ContributedNotebooks" folder whenever you log in again to the app. |
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