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Last modified by dionperd on 2024/04/08 12:54
From version 20.1
edited by dionperd
on 2022/11/08 15:03
Change comment: Uploaded new attachment "BasalGanglia.ipynb", version 1.1
To version 22.1
edited by dionperd
on 2022/12/10 20:38
Change comment: There is no comment for this version

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1 1  (% class="wikigeneratedid" %)
2 2  //McGill University "Summer School in Nonlinear Dynamics for the Life Sciences with Applications to Neuroscience and Psychology" (June 2021)//
3 3  
4 -== What can I find here? ==
4 +=== What can I find here? ===
5 5  
6 6  * Presentation slides from the Summer School lecture on TVB-multiscale cosimulation ([[2021-06-07-McGill_VirtualCourse.pdf>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/MacGillSummerSchool/2021-06-07-McGill_VirtualCourse.pdf]]).
7 7  * [[Homework materials>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/MacGillSummerSchool/Homework]] including a use case of a TVB - Spiking Basal Ganglia multiscale cosimulation notebook (see also attached .zip file at the current page)
8 8  * [[Homework solutions>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/MacGillSummerSchool/HomeworkSolutions.zip]] and [[Homework solutions' outputs>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/MacGillSummerSchool/HomeworkSolutionsOutputs.zip]] (see also attached .zip files at the current page; password protected)
9 -* The notebook BasalGanglia.ipynb used for the demonstration of TVB-multiscale during the lecture.
9 +* The notebook [[BasalGanglia.ipynb>>https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/5thTVBinEBRAINSworkshop20210604/WebHome/BasalGanglia.ipynb?rev=1.1]] used for the demonstration of this TVB-multiscale use case during the lecture.
10 10  
11 11  === Guide to run the use-case notebook ===
12 12  
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17 17  ! unzip ./Homework.zip
18 18  on a cell of a new notebook, from within the same folder.
19 19  1. Finally, navigate inside the decompressed Homework folder and run the notebook BasalGangliaHomework.ipynb. Your results will be saved in your personal drive space and can be found in the "ContributedNotebooks" folder whenever you log in again to the app.
20 -1. You can run the lecture notebook BasalGanglia.ipynb in a similar manner if you upload it to the same path where  [[basal_ganglia_conn>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/MacGillSummerSchool/Homework/basal_ganglia_conn]], and the pictures folder [[pics>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/MacGillSummerSchool/Homework/pics]] are.
20 +1. You can also run the lecture notebook [[BasalGanglia.ipynb>>https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/5thTVBinEBRAINSworkshop20210604/WebHome/BasalGanglia.ipynb?rev=1.1]] in a similar manner, if you upload it to the same path where [[basal_ganglia_conn>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/MacGillSummerSchool/Homework/basal_ganglia_conn]], and the pictures folder [[pics>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/MacGillSummerSchool/Homework/pics]] are.
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