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Last modified by dionperd on 2024/04/08 12:54
From version 24.1
edited by dionperd
on 2024/04/08 12:54
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To version 15.1
edited by dionperd
on 2022/11/08 15:00
Change comment: Uploaded new attachment "pics.zip", version 1.1

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1 1  (% class="wikigeneratedid" %)
2 2  //McGill University "Summer School in Nonlinear Dynamics for the Life Sciences with Applications to Neuroscience and Psychology" (June 2021)//
3 3  
4 -(% class="wikigeneratedid" id="HTVB-multiscaleJupyterHubappsarenowdeprecated21See:A0https:2F2Fwiki.ebrains.eu2Fbin2Fview2FCollabs2Fthe-virtual-brain-multiscale2FA0abouthowtorunTVB-multiscale28TVB-NEST2CTVB-NetPyNE28NEURON292CTVB-ANNarchy29onEBRAINS21" %)
5 -(% style="color:#e74c3c" %)**TVB-multiscale JupyterHub apps are now deprecated! See:**(%%) **[[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/>>url:https://wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/]] (% style="color:#e74c3c" %)about how to run TVB-multiscale (TVB-NEST, TVB-NetPyNE (NEURON), TVB-ANNarchy) on EBRAINS!(%%)**
4 +== What can I find here? ==
6 6  
7 -
8 -=== ===
9 -
10 -=== What can I find here? ===
11 -
12 12  * Presentation slides from the Summer School lecture on TVB-multiscale cosimulation ([[2021-06-07-McGill_VirtualCourse.pdf>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/MacGillSummerSchool/2021-06-07-McGill_VirtualCourse.pdf]]).
13 13  * [[Homework materials>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/MacGillSummerSchool/Homework]] including a use case of a TVB - Spiking Basal Ganglia multiscale cosimulation notebook (see also attached .zip file at the current page)
14 14  * [[Homework solutions>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/MacGillSummerSchool/HomeworkSolutions.zip]] and [[Homework solutions' outputs>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/MacGillSummerSchool/HomeworkSolutionsOutputs.zip]] (see also attached .zip files at the current page; password protected)
15 -* The notebook [[BasalGanglia.ipynb>>https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/5thTVBinEBRAINSworkshop20210604/WebHome/BasalGanglia.ipynb?rev=1.1]] used for the demonstration of this TVB-multiscale use case during the lecture.
16 16  
17 17  === Guide to run the use-case notebook ===
18 18  
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23 23  ! unzip ./Homework.zip
24 24  on a cell of a new notebook, from within the same folder.
25 25  1. Finally, navigate inside the decompressed Homework folder and run the notebook BasalGangliaHomework.ipynb. Your results will be saved in your personal drive space and can be found in the "ContributedNotebooks" folder whenever you log in again to the app.
26 -1. You can also run the lecture notebook [[BasalGanglia.ipynb>>https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/5thTVBinEBRAINSworkshop20210604/WebHome/BasalGanglia.ipynb?rev=1.1]] in a similar manner, if you upload it to the same path where [[basal_ganglia_conn>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/MacGillSummerSchool/Homework/basal_ganglia_conn]], and the pictures folder [[pics>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/MacGillSummerSchool/Homework/pics]] are.
27 27  
28 28  (% class="wikigeneratedid" id="HH4Won27tAppearinToC" %)
29 29  
basal_ganglia_conn.zip
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pics.zip
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