Summary

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  • Collaboratory.Apps.Collab.Code.CollabClass[0]

Details

Page properties

Title

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1		-TVB-multiscale-cosim_McGillSummerSchool_06-2021
	1	+TVB-multiscale-cosi-courses-materials

Content

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2	2	(((
3	3	(% class="container" %)
4	4	(((
5		-= Course on TVB-multiscale cosimulation =
6		-
7		-McGill University "Summer School in Nonlinear Dynamics for the Life Sciences with Applications to Neuroscience and Psychology" (June 2021)
	5	+= Courses on TVB-multiscale cosimulation =
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14	14	(((
15	15	= What can I find here? =
16	16
17		-* [[Homework materials>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/Homework]] including a use case of a TVB - Spiking Basal Ganglia multiscale cosimulation notebook (see also attached .zip file below)
18		-* [[Homework solutions>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/HomeworkSolutions.zip]] and [[Homework solutions' outputs>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/HomeworkSolutionsOutputs.zip]] (see also attached .zip files below; password protected)
	15	+Materials for TVB-multiscale cosimulation courses for
19	19
	17	+* 5th TVB in EBRAINS workshop (June 4th, 2021)
	18	+* [[McGill University "Summer School in Nonlinear Dynamics for the Life Sciences with Applications to Neuroscience and Psychology" (June 7th, 2021)>>https://wiki.ebrains.eu/bin/view/Collabs/tvb-multiscale-cosim-mcgillsummerschool/5thTVBinEBRAINSworkshop20210604/]]
	19	+
20	20	= Who has access? =
21	21
22	22	Everybody with an EBRAINS account.
23	23
24		-
25		-= Guide to run the use-case notebook =
26		-
27		-1. Run the TVB-NEST app by browsing to [[https:~~/~~/tvb-nest.apps.hbp.eu/>>https://tvb-nest.apps.hbp.eu/||target="_top"]] and logging in with your EBRAINS account.
28		-1. Navigate to "ContributedNotebooks" folder, which offers persistent storage for EBRAINS users.
29		-1. You will need the notebook [[BasalGangliaHomework.ipynb>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/Homework/BasalGangliaHomework.ipynb]], the data folder [[basal_ganglia_conn>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/Homework/basal_ganglia_conn]], and the pictures folder [[pics>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/Homework/pics]], found in the [[drive folder "Homework>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/Homework]]. All materials can also be found as a .zip file "Homework.zip" attached to this page (scroll down to find it).
30		-1. The easiest way to get the above materials is to upload "Homework.zip" to "ContributedNotebooks" folder, and run the command
31		-! unzip ./Homework.zip
32		-on a cell of a new notebook, from within the same folder.
33		-1. Finally, navigate inside the decompressed Homework folder and run the notebook BasalGangliaHomework.ipynb. Your results will be saved in your personal drive space and can be found in the "ContributedNotebooks" folder whenever you log in again to the app.
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Collaboratory.Apps.Collab.Code.CollabClass[0]

Description

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1		-This Collab will support the course on TVB multiscale cosimulation given in the McGill University "Summer School in Nonlinear Dynamics for the Life Sciences with Applications to Neuroscience and Psychology" (31/5-6/6, 2021).
2		-
3		-For the moment, students can find the materials (notebook with extended documentation comments, and necessary data) for a TVB - Spiking Basal Ganglia cosimulation use-case, and for the homework. More information is going to follow as we get closer to the summer school.
	1	+This Collab will support the courses on TVB multiscale cosimulation with homeworks' and hands-on sessions' materials