Attention: The EBRAINS IAM will be down Monday, the 21st July 2025, from 17.00 CEST (my timezone) for up to 1 hour. This will any affect services requiring an EBRAINS login, we apologise for any inconvenience caused.


Last modified by dionperd on 2024/04/08 12:55
From version 38.1
edited by dionperd
on 2021/06/02 15:57
Change comment: There is no comment for this version
To version 5.1
edited by dionperd
on 2021/05/17 09:54
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -2,9 +2,9 @@
2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= Course on TVB-multiscale cosimulation =
5 += My Collab's Extended Title =
6 6  
7 -McGill University "Summer School in Nonlinear Dynamics for the Life Sciences with Applications to Neuroscience and Psychology" (June 2021)
7 +My collab's subtitle
8 8  )))
9 9  )))
10 10  
... ... @@ -14,23 +14,13 @@
14 14  (((
15 15  = What can I find here? =
16 16  
17 -* [[Homework materials>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/Homework]] including a use case of a TVB - Spiking Basal Ganglia multiscale cosimulation notebook (see also attached .zip file below)
18 -* [[Homework solutions>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/HomeworkSolutions.zip]] and [[Homework solutions' outputs>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/HomeworkSolutionsOutputs.zip]] (see also attached .zip files below; password protected)
17 +* Notice how the table of contents on the right
18 +* is automatically updated
19 +* to hold this page's headers
19 19  
20 20  = Who has access? =
21 21  
22 -Everybody with an EBRAINS account.
23 -
24 -
25 -= Guide to run the use-case notebook =
26 -
27 -1. Run the TVB-NEST app by browsing to [[https:~~/~~/tvb-nest.apps.hbp.eu/>>https://tvb-nest.apps.hbp.eu/||target="_top"]] and logging in with your EBRAINS account.
28 -1. Navigate to "ContributedNotebooks" folder, which offers persistent storage for EBRAINS users.
29 -1. You will need the notebook [[BasalGangliaHomework.ipynb>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/Homework/BasalGangliaHomework.ipynb]], the data folder [[basal_ganglia_conn>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/Homework/basal_ganglia_conn]], and the pictures folder [[pics>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/Homework/pics]], found in the [[drive folder "Homework>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/Homework]]. All materials can also be found as a .zip file "Homework.zip" attached to this page (scroll down to find it).
30 -1. The easiest way to get the above materials is to upload "Homework.zip" to "ContributedNotebooks" folder, and run the command
31 -! unzip ./Homework.zip
32 -on a cell of a new notebook, from within the same folder.
33 -1. Finally, navigate inside the decompressed Homework folder and run the notebook BasalGangliaHomework.ipynb. Your results will be saved in your personal drive space and can be found in the "ContributedNotebooks" folder whenever you log in again to the app.
23 +Describe the audience of this collab.
34 34  )))
35 35  
36 36  
Homework.zip
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.dionperd
Size
... ... @@ -1,1 +1,0 @@
1 -11.2 MB
Content
HomeworkSolutions.zip
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.dionperd
Size
... ... @@ -1,1 +1,0 @@
1 -4.2 MB
Content
HomeworkSolutionsOutputs.zip
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.dionperd
Size
... ... @@ -1,1 +1,0 @@
1 -23.2 MB
Content
XWiki.XWikiRights[4]
Allow/Deny
... ... @@ -1,1 +1,0 @@
1 -Allow
Groups
... ... @@ -1,1 +1,0 @@
1 -XWiki.XWikiAllGroup
Levels
... ... @@ -1,1 +1,0 @@
1 -view