Wiki source code of EBRAINS_CodeJam2022
Hide last authors
| author | version | line-number | content |
|---|---|---|---|
 |
16.1 | 1 | |
| |
2.1 | 2 | |
| |
23.1 | 3 | (% class="box" style="text-align: center;" %) |
| 4 | ((( | ||
| |
25.1 | 5 | [[**HBP/EBRAINS CodeJam2022**>>https://www.humanbrainproject.eu/en/follow-hbp/events/ebrainshbp-codejam-codejam-12]] |
| |
23.1 | 6 | ))) |
| 7 | |||
| |
16.1 | 8 | (% style="text-align: center;" %) |
| |
28.1 | 9 | === **TVB-Multiscale: Deep Brain Stimulation TVB-ANNarchy use case demonstration & TVB-NETPYNE demonstration** === |
| |
2.1 | 10 | |
| |
16.1 | 11 | November 24th, 2022 |
| |
2.1 | 12 | |
| |
31.1 | 13 | == == |
| |
2.1 | 14 | |
| |
31.1 | 15 | == (% style="color:#e74c3c" %)**TVB-multiscale JupyterHub apps are now deprecated! See:**(%%) **[[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/>>url:https://wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/]] (% style="color:#e74c3c" %)about how to run TVB-multiscale (TVB-NEST, TVB-NetPyNE (NEURON), TVB-ANNarchy) on EBRAINS!(%%)** == |
| |
2.1 | 16 | |
| |
31.1 | 17 | |
| |
2.1 | 18 | === What can I find here? === |
| 19 | |||
| |
22.1 | 20 | * Presentation slides for the [[TVB-Multiscale and for DBS demonstration with TVB-ANNarchy>>attach:2022-11-24_TVB-multiscale_CodeJam2022.pdf]]. |
| 21 | * Presentation slides for the [[TVB-NETPYNE demonstration>>attach:Ebrains_TVB-NetPyNE_slides.pdf]]. | ||
| |
2.1 | 22 | |
| |
15.1 | 23 | === Guide to run the use-case notebooks === |
| |
2.1 | 24 | |
| 25 | 1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>url:https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!) | ||
| |
22.1 | 26 | 1. Navigate to "TVB-Multiscale-Examples/notebooks" folder, and copy its contents to the "Contributed-Notebooks" folder, which offers user-specific persistent storage. |
| 27 | 1. Run the TVB-ANNarchy_DBS_BasalGanglia.ipynb notebook for TVB-ANNarchy DBS Co-Simulation and TVB-NETPYNE_RedWongWang.ipynb for the TVB-NETPYNE Co-Simulation |