INCF Neuroinformatics Assembly 2022 training workshop. Enabling multi-scale data integration: Turning data to knowledge.

Last modified by dionperd on 2024/04/08 12:54

INCF assembly 2022 banner

Title: Enabling multilevel data integration: Turning data to knowledge

Chair: Hosted by NFDI-Neuro 

Date: Sept-15, 2022

Location: Online

Link: https://neuroinformatics.incf.org/2022/program

TVB-multiscale JupyterHub apps are now deprecated! See: https://wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/ about how to run TVB-multiscale (TVB-NEST, TVB-NetPyNE (NEURON), TVB-ANNarchy) on EBRAINS!

What can I find here?

Presentation slides and hands-on materials for the sessions:

  • 14:40 - 15:15 (CEST): Multi-scale co-simulation of a brain model by Dionysios Perdikis (Charité)
  • 15:15 - 16:00 (CEST): Hands-on: Setup a multiscale co-simulation and tune the interface between scales by Dionysios Perdikis (Charité)

Guide to run the use-case notebook

  1. Run the EBRAINS TVB-Multiscale app by browsing to https://tvb-multiscale.apps.hbp.eu/ and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
  2. Navigate to "TVB-Multiscale-Examples/documented_example_notebooks" folder, and upload the WilsonCowan.ipynb notebook, to the "Contributed-Notebooks" folder, which offers user-specific persistent storage.
  3. Run the WilsonCowan.ipynb notebook.