Last modified by dionperd on 2024/04/08 12:55
From version 1.1
edited by dionperd
on 2022/11/08 15:53
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To version 2.1
edited by dionperd
on 2022/11/08 15:55
Change comment: There is no comment for this version

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5 +== **TVB-Multiscale: Deep Brain Stimulation use case demonstration** ==
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7 +November 9th, 2022
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11 +=== What can I find here? ===
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13 +* Presentation slides from the workshop's lecture.
14 +* The notebook ([[SimulateWithEBRAINS.zip>>path:/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/Simulate%20with%20EBRAINS%20TVB-multiscale%20workshop%20presentation/TheVirtual%20BrainInClinicalResearchAugust2022/WebHome/SimulateWithEBRAINS.zip?rev=1.1]]) demonstrated during the workshop.
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16 +=== Guide to run the use-case notebook ===
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18 +1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>url:https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
19 +1. Navigate to "Contributed-Notebooks" folder, which offers user-specific persistent storage.
20 +1. Upload and unzip there [[SimulateWithEBRAINS.zip>>path:/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/Simulate%20with%20EBRAINS%20TVB-multiscale%20workshop%20presentation/TheVirtual%20BrainInClinicalResearchAugust2022/WebHome/SimulateWithEBRAINS.zip?rev=1.1]] by starting a terminal session or a new notebook and running unzip SimulateWithEBRAINS.zip
21 +1. Run the TVB-corr-cortex-opt.ipynb notebook for TVB-ANNarchy cosimulation and the ANNarchy-spiking-cortex.ipynb one for ANNarchy only simulation.