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Last modified by dionperd on 2024/04/08 12:55
From version 10.1
edited by dionperd
on 2022/11/08 17:22
Change comment: Uploaded new attachment "simulate_on_Ebrains-09112022-tvb-multiscale_DP.pdf", version 1.1
To version 1.1
edited by dionperd
on 2022/11/08 15:53
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1 -[[image:SimulateWithEBRAINS.jpg]]
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5 -== **TVB-Multiscale: Deep Brain Stimulation use case demonstration** ==
6 -
7 -November 9th, 2022
8 -
9 -
10 -
11 -=== What can I find here? ===
12 -
13 -* Presentation slides from the workshop's lecture.
14 -* The notebook ([[SimulateWithEBRAINS.zip>>path:https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/Simulate%20with%20EBRAINS%20TVB-multiscale%20workshop%20presentation/WebHome/SimulateWithEBRAINS.zip?rev=1.1]]) demonstrated during the workshop.
15 -
16 -=== Guide to run the use-case notebook ===
17 -
18 -1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>url:https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
19 -1. Navigate to "Contributed-Notebooks" folder, which offers user-specific persistent storage.
20 -1. Upload and unzip there [[SimulateWithEBRAINS.zip>>path:https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/Simulate%20with%20EBRAINS%20TVB-multiscale%20workshop%20presentation/WebHome/SimulateWithEBRAINS.zip?rev=1.1]] by running
21 -unzip SimulateWithEBRAINS.zip
22 -on a terminal, or
23 -! unzip SimulateWithEBRAINS.zip
24 -in a notebook.
25 -1. Run the TVB-corr-cortex-opt.ipynb notebook for TVB-ANNarchy cosimulation and the ANNarchy-spiking-cortex.ipynb one for ANNarchy only simulation.
SimulateWithEBRAINS.jpg
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SimulateWithEBRAINS.zip
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simulate_on_Ebrains-09112022-tvb-multiscale_DP.pdf
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