Changes for page Simulate with EBRAINS TVB-multiscale workshop presentation
Last modified by dionperd on 2024/04/08 12:55
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... ... @@ -1,26 +1,0 @@ 1 -[[image:SimulateWithEBRAINS.jpg]] 2 - 3 - 4 - 5 -== **TVB-Multiscale: Deep Brain Stimulation use case demonstration** == 6 - 7 -November 9th, 2022 8 - 9 - 10 -== (% style="color:#e74c3c" %)**TVB-multiscale JupyterHub apps are now deprecated! See:**(%%) **[[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/>>url:https://wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/]] (% style="color:#e74c3c" %)about how to run TVB-multiscale (TVB-NEST, TVB-NetPyNE (NEURON), TVB-ANNarchy) on EBRAINS!(%%)** == 11 - 12 -=== What can I find here? === 13 - 14 -* [[Presentation slides>>attach:2022-11-09_TVB-multiscale_SimulateWIthEbrains.pdf]] from the workshop's lecture. 15 -* The notebook ([[SimulateWithEBRAINS.zip>>path:https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/Simulate%20with%20EBRAINS%20TVB-multiscale%20workshop%20presentation/WebHome/SimulateWithEBRAINS.zip?rev=1.1]]) demonstrated during the workshop. 16 - 17 -=== Guide to run the use-case notebooks === 18 - 19 -1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>url:https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!) 20 -1. Navigate to "Contributed-Notebooks" folder, which offers user-specific persistent storage. 21 -1. Upload and unzip there [[SimulateWithEBRAINS.zip>>path:https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/Simulate%20with%20EBRAINS%20TVB-multiscale%20workshop%20presentation/WebHome/SimulateWithEBRAINS.zip?rev=1.1]] by running 22 -unzip SimulateWithEBRAINS.zip 23 -on a terminal, or 24 -! unzip SimulateWithEBRAINS.zip 25 -in a notebook. 26 -1. Run the TVB-corr-cortex-opt.ipynb notebook for TVB-ANNarchy cosimulation and the ANNarchy-spiking-cortex.ipynb one for ANNarchy only simulation.
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