Wiki source code of Simulate with EBRAINS TVB-multiscale workshop presentation
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| 1 | [[image:SimulateWithEBRAINS.jpg]] | ||
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| 5 | == **TVB-Multiscale: Deep Brain Stimulation use case demonstration** == | ||
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| 7 | November 9th, 2022 | ||
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| 11 | === What can I find here? === | ||
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| 13 | * [[Presentation slides>>attach:simulate_on_Ebrains-09112022-tvb-multiscale_DP.pdf]] from the workshop's lecture. | ||
| 14 | * The notebook ([[SimulateWithEBRAINS.zip>>path:https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/Simulate%20with%20EBRAINS%20TVB-multiscale%20workshop%20presentation/WebHome/SimulateWithEBRAINS.zip?rev=1.1]]) demonstrated during the workshop. | ||
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| 16 | === Guide to run the use-case notebook === | ||
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| 18 | 1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>url:https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!) | ||
| 19 | 1. Navigate to "Contributed-Notebooks" folder, which offers user-specific persistent storage. | ||
| 20 | 1. Upload and unzip there [[SimulateWithEBRAINS.zip>>path:https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/Simulate%20with%20EBRAINS%20TVB-multiscale%20workshop%20presentation/WebHome/SimulateWithEBRAINS.zip?rev=1.1]] by running | ||
| 21 | unzip SimulateWithEBRAINS.zip | ||
| 22 | on a terminal, or | ||
| 23 | ! unzip SimulateWithEBRAINS.zip | ||
| 24 | in a notebook. | ||
| 25 | 1. Run the TVB-corr-cortex-opt.ipynb notebook for TVB-ANNarchy cosimulation and the ANNarchy-spiking-cortex.ipynb one for ANNarchy only simulation. |