Wiki source code of Simulate with EBRAINS TVB-multiscale workshop presentation
Hide last authors
| author | version | line-number | content |
|---|---|---|---|
 |
3.1 | 1 | [[image:SimulateWithEBRAINS.jpg]] |
| |
2.1 | 2 | |
| 3 | |||
| 4 | |||
| 5 | == **TVB-Multiscale: Deep Brain Stimulation use case demonstration** == | ||
| 6 | |||
| 7 | November 9th, 2022 | ||
| 8 | |||
| 9 | |||
| 10 | |||
| 11 | === What can I find here? === | ||
| 12 | |||
| 13 | * Presentation slides from the workshop's lecture. | ||
| 14 | * The notebook ([[SimulateWithEBRAINS.zip>>path:/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/Simulate%20with%20EBRAINS%20TVB-multiscale%20workshop%20presentation/TheVirtual%20BrainInClinicalResearchAugust2022/WebHome/SimulateWithEBRAINS.zip?rev=1.1]]) demonstrated during the workshop. | ||
| 15 | |||
| 16 | === Guide to run the use-case notebook === | ||
| 17 | |||
| 18 | 1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>url:https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!) | ||
| 19 | 1. Navigate to "Contributed-Notebooks" folder, which offers user-specific persistent storage. | ||
| 20 | 1. Upload and unzip there [[SimulateWithEBRAINS.zip>>path:/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/Simulate%20with%20EBRAINS%20TVB-multiscale%20workshop%20presentation/TheVirtual%20BrainInClinicalResearchAugust2022/WebHome/SimulateWithEBRAINS.zip?rev=1.1]] by starting a terminal session or a new notebook and running unzip SimulateWithEBRAINS.zip | ||
| 21 | 1. Run the TVB-corr-cortex-opt.ipynb notebook for TVB-ANNarchy cosimulation and the ANNarchy-spiking-cortex.ipynb one for ANNarchy only simulation. |