Attention: The EBRAINS Wiki and IDM will be down Wednesday 29th October, from 13:00 CEST  for up to 5 minutes due to an upgrade. 


Last modified by dionperd on 2024/04/08 12:54
From version 1.1
edited by dionperd
on 2022/08/05 12:19
Change comment: There is no comment for this version
To version 32.1
edited by dionperd
on 2022/11/08 16:57
Change comment: There is no comment for this version

Summary

Details

Page properties
Title
... ... @@ -1,1 +1,1 @@
1 -TheVirtual BrainInClinicalResearchAugust2022
1 +The Virtual Brain In Clinical Research August 2022
Content
... ... @@ -1,7 +1,34 @@
1 -(% class="wikigeneratedid" %)
2 -== [[image:https://www.brainsimulation.org/bsw/img/9687/text_illustration_maxi@2x||alt="Virtual Course Series Summer 2022 Banner"]] ==
1 +== ==
3 3  
4 -(% class="wikigeneratedid" %)
5 -== **The Virtual Brain in Clinical Research: An Introduction**. Charite, June 28th, 2022 to September 13th, 2022 ==
3 +[[image:VirtualBrainClinicalResearch.png]]
6 6  
5 +== **Week 7 “The Virtual Brain and multiscale co-simulation” – Dr. Dionysios Perdikis** ==
6 +
7 +August 9th, 2022
8 +
9 +
10 +=== What can I find here? ===
11 +
12 +* Presentation slides from the course's lecture.
13 +* Materials recommended for further study
14 +* Guid to run the notebook TVB-NEST co-simulation demonstrated in the course.
15 +
16 +
17 +=== Recommendation for self-study ===
18 +
19 +* [[TVB advanced tutorials>>https://training.incf.org/course/virtual-brain-node-6-workshop]]
20 +* [[Schirner, Domide, Perdikis, Triebkorn, Stefanovski, Pai, Prodan, Valean, Palmer, Langford, Blickensdörfer, van der Vlag, Diaz-Pier, Peyser, Woodman, Zehl, Fousek, Petkoski, Kusch, Hashemi, Marinazzo, Mangin, Flöel, Akintoye, Stahl, Deco, McIntosh, Hilgetag, Morgan, Schuller, Upton, McMurtrie, Dickscheid, Bjaalie, Amunts, Mersmann, Jirsa, Ritter (2022). Brain Simulation as a Cloud Service: The Virtual Brain on the European Research Platform EBRAINS. Neuroimage>>https://www.sciencedirect.com/science/article/pii/S1053811922001021]]
21 +* (((
22 +[[Sanz-Leon, P., Knock, S. A., Spiegler, A., & Jirsa, V. K. (2015). Mathematical framework for large-scale brain network modeling in The Virtual Brain. Neuroimage>>https://www.sciencedirect.com/science/article/pii/S1053811915000051]]
23 +)))
24 +
25 +=== ===
26 +
27 +
28 +=== Guide to run the course's notebook ===
29 +
30 +1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>url:https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
31 +1. Navigate to "TVB-Multiscale-Examples/documented_example_notebooks" folder, and upload the [[WilsonCowan.ipynb notebook>>path:/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/INCF%20Neuroinformatics%20Assembly%202022%20training%20workshop.%20Enabling%20multi-scale%20data%20integration%3A%20Turning%20data%20to%20knowledge./WebHome/WilsonCowan.ipynb?rev=1.1]], to the "Contributed-Notebooks" folder, which offers user-specific persistent storage.
32 +1. Run the WilsonCowan.ipynb notebook.
33 +
7 7  == ==
VirtualBrainClinicalResearch.png
Author
... ... @@ -1,0 +1,1 @@
1 +XWiki.dionperd
Size
... ... @@ -1,0 +1,1 @@
1 +797.2 KB
Content